Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP1O94782 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
USP1O94782 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.38■□□□□ 0.85
USP1O94782 KRT18P11-201ENST00000435214 1283 ntBASIC20.38■□□□□ 0.85
USP1O94782 KRT18P5-201ENST00000436075 1291 ntBASIC20.38■□□□□ 0.85
USP1O94782 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.38■□□□□ 0.85
USP1O94782 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.38■□□□□ 0.85
USP1O94782 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.38■□□□□ 0.85
USP1O94782 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.38■□□□□ 0.85
USP1O94782 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
USP1O94782 AL591742.1-201ENST00000604433 565 ntBASIC20.38■□□□□ 0.85
USP1O94782 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP1O94782 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP1O94782 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP1O94782 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP1O94782 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP1O94782 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
USP1O94782 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
USP1O94782 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 PGM5P4-201ENST00000421970 445 ntBASIC20.37■□□□□ 0.85
USP1O94782 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.37■□□□□ 0.85
USP1O94782 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
USP1O94782 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 DPP3P2-201ENST00000416030 1696 ntBASIC20.37■□□□□ 0.85
USP1O94782 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
USP1O94782 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.37■□□□□ 0.85
USP1O94782 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP1O94782 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.36■□□□□ 0.85
USP1O94782 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.36■□□□□ 0.85
USP1O94782 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
USP1O94782 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
USP1O94782 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.36■□□□□ 0.85
USP1O94782 AC007322.4-201ENST00000509611 723 ntBASIC20.36■□□□□ 0.85
USP1O94782 AL162412.1-201ENST00000567129 965 ntBASIC20.36■□□□□ 0.85
USP1O94782 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
USP1O94782 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.36■□□□□ 0.85
USP1O94782 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP1O94782 AC087289.5-201ENST00000586076 3175 ntBASIC20.36■□□□□ 0.85
USP1O94782 AC087633.2-202ENST00000565166 1439 ntBASIC20.36■□□□□ 0.85
USP1O94782 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.35■□□□□ 0.85
USP1O94782 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.35■□□□□ 0.85
USP1O94782 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.35■□□□□ 0.85
USP1O94782 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
USP1O94782 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.35■□□□□ 0.85
USP1O94782 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
USP1O94782 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP1O94782 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.35■□□□□ 0.85
USP1O94782 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP1O94782 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.34■□□□□ 0.85
USP1O94782 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP1O94782 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP1O94782 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.34■□□□□ 0.85
USP1O94782 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP1O94782 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP1O94782 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP1O94782 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.34■□□□□ 0.85
USP1O94782 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.34■□□□□ 0.85
USP1O94782 AC137761.2-201ENST00000561729 223 ntBASIC20.34■□□□□ 0.85
USP1O94782 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.34■□□□□ 0.85
USP1O94782 AC145350.3-201ENST00000569033 163 ntBASIC20.34■□□□□ 0.85
USP1O94782 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
USP1O94782 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.34■□□□□ 0.85
USP1O94782 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms