Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXA3O43365 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.23■□□□□ 0.19
HOXA3O43365 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HOXA3O43365 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
HOXA3O43365 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXA3O43365 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HOXA3O43365 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXA3O43365 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 FBXW4P1-201ENST00000426721 2239 ntBASIC16.23■□□□□ 0.19
HOXA3O43365 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXA3O43365 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXA3O43365 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HOXA3O43365 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXA3O43365 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 KRASP1-201ENST00000407852 552 ntBASIC16.22■□□□□ 0.19
HOXA3O43365 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HOXA3O43365 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXA3O43365 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXA3O43365 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXA3O43365 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HOXA3O43365 SLC25A24-204ENST00000569674 2357 ntBASIC16.21■□□□□ 0.19
HOXA3O43365 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXA3O43365 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXA3O43365 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXA3O43365 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.21■□□□□ 0.19
HOXA3O43365 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXA3O43365 Z98882.1-201ENST00000622160 2253 ntBASIC16.21■□□□□ 0.19
HOXA3O43365 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXA3O43365 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.21■□□□□ 0.18
HOXA3O43365 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.21■□□□□ 0.18
HOXA3O43365 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXA3O43365 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXA3O43365 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.2■□□□□ 0.18
HOXA3O43365 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 RPS2P55-201ENST00000397318 883 ntBASIC16.2■□□□□ 0.18
HOXA3O43365 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXA3O43365 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 AC012618.2-201ENST00000428058 849 ntBASIC16.2■□□□□ 0.18
HOXA3O43365 AC133681.1-201ENST00000465482 601 ntBASIC16.2■□□□□ 0.18
HOXA3O43365 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXA3O43365 AC107956.1-201ENST00000494359 873 ntBASIC16.2■□□□□ 0.18
HOXA3O43365 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXA3O43365 PRKY-204ENST00000533551 1019 ntBASIC16.2■□□□□ 0.18
HOXA3O43365 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.2■□□□□ 0.18
HOXA3O43365 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.2■□□□□ 0.18
HOXA3O43365 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.2■□□□□ 0.18
HOXA3O43365 AC110285.5-201ENST00000611501 352 ntBASIC16.2■□□□□ 0.18
HOXA3O43365 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HOXA3O43365 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXA3O43365 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms