Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.23
MSH4O15457 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
MSH4O15457 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH4O15457 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH4O15457 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH4O15457 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
MSH4O15457 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
MSH4O15457 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC22.7■■□□□ 1.22
MSH4O15457 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC22.7■■□□□ 1.22
MSH4O15457 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
MSH4O15457 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH4O15457 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC22.7■■□□□ 1.22
MSH4O15457 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH4O15457 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
MSH4O15457 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.7■■□□□ 1.22
MSH4O15457 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH4O15457 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.69■■□□□ 1.22
MSH4O15457 SMG8-203ENST00000578922 2178 ntBASIC22.69■■□□□ 1.22
MSH4O15457 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH4O15457 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH4O15457 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH4O15457 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC22.69■■□□□ 1.22
MSH4O15457 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH4O15457 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
MSH4O15457 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.68■■□□□ 1.22
MSH4O15457 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC22.68■■□□□ 1.22
MSH4O15457 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.68■■□□□ 1.22
MSH4O15457 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
MSH4O15457 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH4O15457 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH4O15457 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
MSH4O15457 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH4O15457 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 RER1-204ENST00000378518 522 ntTSL 3 BASIC22.67■■□□□ 1.22
MSH4O15457 AL390719.1-204ENST00000412397 1219 ntBASIC22.67■■□□□ 1.22
MSH4O15457 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC22.67■■□□□ 1.22
MSH4O15457 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH4O15457 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC22.67■■□□□ 1.22
MSH4O15457 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.67■■□□□ 1.22
MSH4O15457 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 AC008687.6-201ENST00000596318 630 ntBASIC22.67■■□□□ 1.22
MSH4O15457 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC22.67■■□□□ 1.22
MSH4O15457 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH4O15457 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
MSH4O15457 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
MSH4O15457 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.66■■□□□ 1.22
MSH4O15457 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.66■■□□□ 1.22
MSH4O15457 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC22.66■■□□□ 1.22
MSH4O15457 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC22.66■■□□□ 1.22
MSH4O15457 AC006058.3-201ENST00000606217 1069 ntBASIC22.66■■□□□ 1.22
MSH4O15457 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.66■■□□□ 1.22
MSH4O15457 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH4O15457 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.66■■□□□ 1.22
MSH4O15457 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.66■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms