Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.57■□□□□ 0.56
CPSF4LA6NMK7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPSF4LA6NMK7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 AC034268.1-201ENST00000441047 882 ntBASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms