Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
PCDHA1Q9Y5I3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 PKD1P6-201ENST00000343738 4769 ntBASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
PCDHA1Q9Y5I3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 KRT17P3-201ENST00000420566 1262 ntBASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 AC023632.3-201ENST00000521633 145 ntBASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.19■■□□□ 1.3
PCDHA1Q9Y5I3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 RER1-204ENST00000378518 522 ntTSL 3 BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA1Q9Y5I3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 POM121L13P-201ENST00000422362 380 ntBASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 AC098590.1-201ENST00000468126 897 ntBASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 AC233263.1-201ENST00000578059 224 ntBASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
PCDHA1Q9Y5I3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 PTBP1P-201ENST00000554374 1601 ntBASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 AC120498.8-201ENST00000614275 531 ntBASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA1Q9Y5I3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.15■■□□□ 1.3
PCDHA1Q9Y5I3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHA1Q9Y5I3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHA1Q9Y5I3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
PCDHA1Q9Y5I3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms