Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 TMEM191A-211ENST00000637163 1067 ntBASIC20.83■□□□□ 0.93
USP29Q9HBJ7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP29Q9HBJ7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
USP29Q9HBJ7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP29Q9HBJ7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
USP29Q9HBJ7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP29Q9HBJ7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 FAM21FP-204ENST00000608637 956 ntBASIC20.82■□□□□ 0.92
USP29Q9HBJ7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP29Q9HBJ7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 AC007322.4-201ENST00000509611 723 ntBASIC20.81■□□□□ 0.92
USP29Q9HBJ7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 AC133552.2-202ENST00000575694 574 ntBASIC20.81■□□□□ 0.92
USP29Q9HBJ7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.81■□□□□ 0.92
USP29Q9HBJ7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 TCF3P1-201ENST00000423021 1937 ntBASIC20.8■□□□□ 0.92
USP29Q9HBJ7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 GUSBP6-202ENST00000438529 1198 ntBASIC20.8■□□□□ 0.92
USP29Q9HBJ7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 AL162412.1-201ENST00000567129 965 ntBASIC20.8■□□□□ 0.92
USP29Q9HBJ7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 AC016405.3-201ENST00000607710 860 ntBASIC20.8■□□□□ 0.92
USP29Q9HBJ7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.8■□□□□ 0.92
USP29Q9HBJ7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 AC073210.2-201ENST00000430369 194 ntBASIC20.79■□□□□ 0.92
USP29Q9HBJ7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 AF201337.1-201ENST00000520239 748 ntBASIC20.79■□□□□ 0.92
USP29Q9HBJ7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.79■□□□□ 0.92
USP29Q9HBJ7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms