Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
CCDC140Q96MF4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC140Q96MF4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 AC083906.2-201ENST00000511578 360 ntBASIC15.65■□□□□ 0.1
CCDC140Q96MF4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC15.65■□□□□ 0.1
CCDC140Q96MF4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC140Q96MF4 AL391422.3-201ENST00000603791 2761 ntBASIC15.64■□□□□ 0.09
CCDC140Q96MF4 AC099778.1-201ENST00000568593 1911 ntBASIC15.64■□□□□ 0.09
CCDC140Q96MF4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 NCF1B-203ENST00000435988 1254 ntBASIC15.64■□□□□ 0.09
CCDC140Q96MF4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC140Q96MF4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC15.63■□□□□ 0.09
CCDC140Q96MF4 LSM12P1-201ENST00000411836 588 ntBASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms