Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 KRT8P36-201ENST00000489121 1440 ntBASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HDDC3Q8N4P3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 BX088651.1-201ENST00000540551 451 ntBASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDDC3Q8N4P3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 PKD1P6-201ENST00000343738 4769 ntBASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
HDDC3Q8N4P3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 FEM1AP4-201ENST00000443167 1987 ntBASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 AC012618.2-201ENST00000428058 849 ntBASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDDC3Q8N4P3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 AP001412.1-201ENST00000608405 714 ntBASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
HDDC3Q8N4P3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms