Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.39■□□□□ 0.53
NIPAL3Q6P499 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.38■□□□□ 0.53
NIPAL3Q6P499 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NIPAL3Q6P499 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 AC091799.1-201ENST00000422823 811 ntBASIC18.36■□□□□ 0.53
NIPAL3Q6P499 TCF3P1-201ENST00000423021 1937 ntBASIC18.36■□□□□ 0.53
NIPAL3Q6P499 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 DUX4L16-201ENST00000555130 1264 ntBASIC18.36■□□□□ 0.53
NIPAL3Q6P499 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 AC013268.1-206ENST00000638368 961 ntBASIC18.36■□□□□ 0.53
NIPAL3Q6P499 AC112229.1-201ENST00000639295 961 ntBASIC18.36■□□□□ 0.53
NIPAL3Q6P499 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NIPAL3Q6P499 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.35■□□□□ 0.53
NIPAL3Q6P499 AC080038.1-201ENST00000611274 1154 ntBASIC18.35■□□□□ 0.53
NIPAL3Q6P499 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NIPAL3Q6P499 AC116050.2-201ENST00000612102 1779 ntBASIC18.35■□□□□ 0.53
NIPAL3Q6P499 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NIPAL3Q6P499 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms