Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 AC004854.2-201ENST00000608450 1441 ntBASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 SLC7A5P2-201ENST00000553010 536 ntBASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 AL050303.2-201ENST00000619798 666 ntBASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDLIM3Q53GG5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 AC007225.1-201ENST00000566331 1836 ntBASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PDLIM3Q53GG5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PDLIM3Q53GG5 AC027702.1-201ENST00000563810 1770 ntBASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 AC020907.5-201ENST00000624372 1936 ntBASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 RPS2P4-201ENST00000476944 856 ntBASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 AC105233.4-201ENST00000642045 216 ntBASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms