Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA3P55318 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
FOXA3P55318 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
FOXA3P55318 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
FOXA3P55318 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
FOXA3P55318 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA3P55318 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA3P55318 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA3P55318 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA3P55318 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FOXA3P55318 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA3P55318 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
FOXA3P55318 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA3P55318 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA3P55318 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
FOXA3P55318 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
FOXA3P55318 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
FOXA3P55318 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA3P55318 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 AC055733.4-201ENST00000638462 1354 ntBASIC15.13■□□□□ 0.01
FOXA3P55318 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA3P55318 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA3P55318 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA3P55318 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA3P55318 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 MIR6724-1-201ENST00000616420 92 ntBASIC15.12■□□□□ 0.01
FOXA3P55318 MIR6724-2-201ENST00000616483 92 ntBASIC15.12■□□□□ 0.01
FOXA3P55318 MIR6724-4-201ENST00000617390 92 ntBASIC15.12■□□□□ 0.01
FOXA3P55318 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA3P55318 MIR6724-3-201ENST00000622482 92 ntBASIC15.12■□□□□ 0.01
FOXA3P55318 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA3P55318 TMEM179-206ENST00000616017 1645 ntBASIC15.12■□□□□ 0.01
FOXA3P55318 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
FOXA3P55318 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
FOXA3P55318 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
FOXA3P55318 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA3P55318 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA3P55318 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA3P55318 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
FOXA3P55318 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA3P55318 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA3P55318 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA3P55318 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC15.11■□□□□ 0.01
FOXA3P55318 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA3P55318 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.11■□□□□ 0.01
FOXA3P55318 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC15.11■□□□□ 0.01
FOXA3P55318 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms