Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.13■□□□□ 0.97
LIG3P49916 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.13■□□□□ 0.97
LIG3P49916 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.12■□□□□ 0.97
LIG3P49916 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LIG3P49916 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
LIG3P49916 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
LIG3P49916 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.12■□□□□ 0.97
LIG3P49916 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 SLC7A5P2-201ENST00000553010 536 ntBASIC21.12■□□□□ 0.97
LIG3P49916 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIG3P49916 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LIG3P49916 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.12■□□□□ 0.97
LIG3P49916 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.11■□□□□ 0.97
LIG3P49916 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.11■□□□□ 0.97
LIG3P49916 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.11■□□□□ 0.97
LIG3P49916 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
LIG3P49916 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIG3P49916 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.11■□□□□ 0.97
LIG3P49916 AC073314.1-201ENST00000568729 2216 ntBASIC21.1■□□□□ 0.97
LIG3P49916 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
LIG3P49916 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
LIG3P49916 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 BX323043.1-201ENST00000641006 1765 ntBASIC21.1■□□□□ 0.97
LIG3P49916 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LIG3P49916 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
LIG3P49916 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.1■□□□□ 0.97
LIG3P49916 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.1■□□□□ 0.97
LIG3P49916 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.1■□□□□ 0.97
LIG3P49916 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LIG3P49916 RAP2CP1-201ENST00000605103 478 ntBASIC21.1■□□□□ 0.97
LIG3P49916 AC008175.2-201ENST00000612840 297 ntBASIC21.1■□□□□ 0.97
LIG3P49916 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
LIG3P49916 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIG3P49916 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.1■□□□□ 0.97
LIG3P49916 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
LIG3P49916 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LIG3P49916 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.09■□□□□ 0.97
LIG3P49916 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LIG3P49916 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.09■□□□□ 0.97
LIG3P49916 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.09■□□□□ 0.97
LIG3P49916 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.09■□□□□ 0.97
LIG3P49916 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
LIG3P49916 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIG3P49916 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.09■□□□□ 0.97
LIG3P49916 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIG3P49916 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIG3P49916 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.08■□□□□ 0.97
LIG3P49916 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.08■□□□□ 0.97
LIG3P49916 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.08■□□□□ 0.97
LIG3P49916 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
LIG3P49916 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
LIG3P49916 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIG3P49916 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms