Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCC3P46736 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.6■■□□□ 1.05
BRCC3P46736 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
BRCC3P46736 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.59■■□□□ 1.05
BRCC3P46736 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
BRCC3P46736 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.59■■□□□ 1.05
BRCC3P46736 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.59■■□□□ 1.05
BRCC3P46736 AL023875.1-201ENST00000640777 796 ntBASIC21.59■■□□□ 1.05
BRCC3P46736 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.59■■□□□ 1.05
BRCC3P46736 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.59■■□□□ 1.05
BRCC3P46736 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCC3P46736 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.58■■□□□ 1.05
BRCC3P46736 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.58■■□□□ 1.05
BRCC3P46736 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCC3P46736 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
BRCC3P46736 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
BRCC3P46736 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
BRCC3P46736 AC005229.4-201ENST00000610085 2198 ntBASIC21.58■■□□□ 1.04
BRCC3P46736 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
BRCC3P46736 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.58■■□□□ 1.04
BRCC3P46736 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
BRCC3P46736 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.57■■□□□ 1.04
BRCC3P46736 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
BRCC3P46736 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.57■■□□□ 1.04
BRCC3P46736 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.57■■□□□ 1.04
BRCC3P46736 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.57■■□□□ 1.04
BRCC3P46736 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.57■■□□□ 1.04
BRCC3P46736 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.57■■□□□ 1.04
BRCC3P46736 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.57■■□□□ 1.04
BRCC3P46736 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.57■■□□□ 1.04
BRCC3P46736 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
BRCC3P46736 FP700111.2-201ENST00000619190 1892 ntBASIC21.57■■□□□ 1.04
BRCC3P46736 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.57■■□□□ 1.04
BRCC3P46736 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCC3P46736 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
BRCC3P46736 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCC3P46736 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
BRCC3P46736 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.56■■□□□ 1.04
BRCC3P46736 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCC3P46736 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
BRCC3P46736 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCC3P46736 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
BRCC3P46736 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCC3P46736 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.56■■□□□ 1.04
BRCC3P46736 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.55■■□□□ 1.04
BRCC3P46736 AC124283.5-201ENST00000624661 1809 ntBASIC21.55■■□□□ 1.04
BRCC3P46736 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 AC023632.3-201ENST00000521633 145 ntBASIC21.55■■□□□ 1.04
BRCC3P46736 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.55■■□□□ 1.04
BRCC3P46736 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.55■■□□□ 1.04
BRCC3P46736 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.55■■□□□ 1.04
BRCC3P46736 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
BRCC3P46736 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
BRCC3P46736 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCC3P46736 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
BRCC3P46736 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
BRCC3P46736 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.54■■□□□ 1.04
BRCC3P46736 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCC3P46736 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCC3P46736 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.54■■□□□ 1.04
BRCC3P46736 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms