Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YOR161W-BYOR161W-B 261 nt0.82□□□□□ -2.28
CUP9P41817 SLX4YLR135W 2247 nt0.82□□□□□ -2.28
CUP9P41817 YCR100CYCR100C 951 nt0.81□□□□□ -2.28
CUP9P41817 PAU2YEL049W 363 nt0.81□□□□□ -2.28
CUP9P41817 CHZ1YER030W 462 nt0.81□□□□□ -2.28
CUP9P41817 PAU12YGR294W 363 nt0.81□□□□□ -2.28
CUP9P41817 tT(UGU)Q1tT(UGU)Q1 76 nt0.81□□□□□ -2.28
CUP9P41817 PHS1YJL097W 654 nt0.81□□□□□ -2.28
CUP9P41817 YJR140W-AYJR140W-A 150 nt0.81□□□□□ -2.28
CUP9P41817 YMR175W-AYMR175W-A 195 nt0.81□□□□□ -2.28
CUP9P41817 PAU24YBR301W 363 nt0.81□□□□□ -2.28
CUP9P41817 SWI4YER111C 3282 nt0.8□□□□□ -2.28
CUP9P41817 snR5snR5 204 nt0.8□□□□□ -2.28
CUP9P41817 TIM10YHR005C-A 282 nt0.8□□□□□ -2.28
CUP9P41817 LRP1YHR081W 555 nt0.8□□□□□ -2.28
CUP9P41817 ERP4YOR016C 624 nt0.8□□□□□ -2.28
CUP9P41817 STB6YKL072W 2301 nt0.8□□□□□ -2.28
CUP9P41817 YJR003CYJR003C 1560 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)BtF(GAA)B 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)FtF(GAA)F 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)GtF(GAA)G 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)H1tF(GAA)H1 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)H2tF(GAA)H2 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)MtF(GAA)M 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)P1tF(GAA)P1 73 nt0.79□□□□□ -2.28
CUP9P41817 tF(GAA)P2tF(GAA)P2 73 nt0.79□□□□□ -2.28
CUP9P41817 SMB1YER029C 591 nt0.79□□□□□ -2.28
CUP9P41817 YIL142C-AYIL142C-A 333 nt0.79□□□□□ -2.28
CUP9P41817 SDS22YKL193C 1017 nt0.79□□□□□ -2.28
CUP9P41817 COX7YMR256C 183 nt0.79□□□□□ -2.28
CUP9P41817 YOR032W-AYOR032W-A 201 nt0.79□□□□□ -2.28
CUP9P41817 YPL197CYPL197C 414 nt0.79□□□□□ -2.28
CUP9P41817 BI4Q0120 1917 nt0.79□□□□□ -2.28
CUP9P41817 YLL054CYLL054C 2532 nt0.79□□□□□ -2.28
CUP9P41817 IFH1YLR223C 3258 nt0.79□□□□□ -2.28
CUP9P41817 SGO1YOR073W 1773 nt0.78□□□□□ -2.28
CUP9P41817 snR79snR79 84 nt0.78□□□□□ -2.28
CUP9P41817 YAL066WYAL066W 309 nt0.78□□□□□ -2.28
CUP9P41817 RPL9BYNL067W 576 nt0.78□□□□□ -2.28
CUP9P41817 YNL146C-AYNL146C-A 195 nt0.78□□□□□ -2.28
CUP9P41817 YOR072W-AYOR072W-A 249 nt0.78□□□□□ -2.28
CUP9P41817 snR14snR14 160 nt0.78□□□□□ -2.28
CUP9P41817 YCL002CYCL002C 792 nt0.78□□□□□ -2.28
CUP9P41817 SEC3YER008C 4011 nt0.78□□□□□ -2.28
CUP9P41817 YDL152WYDL152W 366 nt0.77□□□□□ -2.29
CUP9P41817 YDR220CYDR220C 294 nt0.77□□□□□ -2.29
CUP9P41817 YGR228WYGR228W 345 nt0.77□□□□□ -2.29
CUP9P41817 YHR028W-AYHR028W-A 321 nt0.77□□□□□ -2.29
CUP9P41817 YML009C-AYML009C-A 327 nt0.77□□□□□ -2.29
CUP9P41817 YPR096CYPR096C 303 nt0.77□□□□□ -2.29
CUP9P41817 HDA3YPR179C 1968 nt0.77□□□□□ -2.29
CUP9P41817 SMC1YFL008W 3678 nt0.77□□□□□ -2.29
CUP9P41817 UTP20YBL004W 7482 nt0.77□□□□□ -2.29
CUP9P41817 NUT1YGL151W 3399 nt0.76□□□□□ -2.29
CUP9P41817 APL3YBL037W 3078 nt0.76□□□□□ -2.29
CUP9P41817 GDS1YOR355W 1569 nt0.76□□□□□ -2.29
CUP9P41817 YIR020CYIR020C 303 nt0.76□□□□□ -2.29
CUP9P41817 RPS18BYML026C 441 nt0.76□□□□□ -2.29
CUP9P41817 SPT21YMR179W 2277 nt0.75□□□□□ -2.29
CUP9P41817 YFL002W-BYFL002W-B 1317 nt0.75□□□□□ -2.29
CUP9P41817 YGR161W-AYGR161W-A 1317 nt0.75□□□□□ -2.29
CUP9P41817 YBL100W-AYBL100W-A 1317 nt0.75□□□□□ -2.29
CUP9P41817 YOR192C-AYOR192C-A 1317 nt0.75□□□□□ -2.29
CUP9P41817 YCL020WYCL020W 1317 nt0.75□□□□□ -2.29
CUP9P41817 YGL015CYGL015C 393 nt0.75□□□□□ -2.29
CUP9P41817 MND1YGL183C 660 nt0.75□□□□□ -2.29
CUP9P41817 QCR9YGR183C 201 nt0.75□□□□□ -2.29
CUP9P41817 YBL029C-AYBL029C-A 285 nt0.75□□□□□ -2.29
CUP9P41817 KAP120YPL125W 3099 nt0.74□□□□□ -2.29
CUP9P41817 UTP13YLR222C 2454 nt0.74□□□□□ -2.29
CUP9P41817 YKL111CYKL111C 336 nt0.74□□□□□ -2.29
CUP9P41817 YLR271WYLR271W 825 nt0.74□□□□□ -2.29
CUP9P41817 GPM2YDL021W 936 nt0.73□□□□□ -2.29
CUP9P41817 YDR003W-AYDR003W-A 123 nt0.73□□□□□ -2.29
CUP9P41817 RPC10YHR143W-A 213 nt0.73□□□□□ -2.29
CUP9P41817 SWS2YNL081C 432 nt0.73□□□□□ -2.29
CUP9P41817 QCR7YDR529C 384 nt0.72□□□□□ -2.29
CUP9P41817 PRM8YGL053W 714 nt0.72□□□□□ -2.29
CUP9P41817 BMT5YIL096C 1011 nt0.72□□□□□ -2.29
CUP9P41817 HIT1YJR055W 495 nt0.72□□□□□ -2.29
CUP9P41817 NBP1YLR457C 960 nt0.72□□□□□ -2.29
CUP9P41817 YMR254CYMR254C 309 nt0.72□□□□□ -2.29
CUP9P41817 IRC23YOR044W 474 nt0.72□□□□□ -2.29
CUP9P41817 CSM4YPL200W 471 nt0.72□□□□□ -2.29
CUP9P41817 YBR063CYBR063C 1215 nt0.72□□□□□ -2.29
CUP9P41817 YOP1YPR028W 543 nt0.72□□□□□ -2.29
CUP9P41817 YMR160WYMR160W 2451 nt0.72□□□□□ -2.29
CUP9P41817 SRP14YDL092W 441 nt0.71□□□□□ -2.3
CUP9P41817 snR9snR9 187 nt0.71□□□□□ -2.3
CUP9P41817 YPR117WYPR117W 7470 nt0.71□□□□□ -2.3
CUP9P41817 YCK3YER123W 1575 nt0.7□□□□□ -2.3
CUP9P41817 SWI5YDR146C 2130 nt0.7□□□□□ -2.3
CUP9P41817 SCEIQ0160 708 nt0.7□□□□□ -2.3
CUP9P41817 ZIP1YDR285W 2628 nt0.69□□□□□ -2.3
CUP9P41817 SAS3YBL052C 2496 nt0.69□□□□□ -2.3
CUP9P41817 YDR509WYDR509W 348 nt0.69□□□□□ -2.3
CUP9P41817 IPP1YBR011C 864 nt0.69□□□□□ -2.3
CUP9P41817 YPR099CYPR099C 357 nt0.69□□□□□ -2.3
CUP9P41817 YBR121C-AYBR121C-A 159 nt0.69□□□□□ -2.3
CUP9P41817 PIG1YLR273C 1947 nt0.68□□□□□ -2.3
Retrieved 100 of 7,029 protein–RNA pairs in 26.5 ms