Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.32■□□□□ 0.84
CCNFP41002 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CCNFP41002 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 AC125437.2-201ENST00000625180 2167 ntBASIC20.32■□□□□ 0.84
CCNFP41002 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CCNFP41002 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.31■□□□□ 0.84
CCNFP41002 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.31■□□□□ 0.84
CCNFP41002 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCNFP41002 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 AC006015.1-201ENST00000429970 570 ntBASIC20.31■□□□□ 0.84
CCNFP41002 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNFP41002 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.31■□□□□ 0.84
CCNFP41002 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNFP41002 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.31■□□□□ 0.84
CCNFP41002 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.31■□□□□ 0.84
CCNFP41002 AC022517.1-201ENST00000592429 346 ntBASIC20.31■□□□□ 0.84
CCNFP41002 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.31■□□□□ 0.84
CCNFP41002 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.31■□□□□ 0.84
CCNFP41002 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCNFP41002 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CCNFP41002 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCNFP41002 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNFP41002 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.3■□□□□ 0.84
CCNFP41002 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNFP41002 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNFP41002 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNFP41002 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.3■□□□□ 0.84
CCNFP41002 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.3■□□□□ 0.84
CCNFP41002 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.3■□□□□ 0.84
CCNFP41002 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.3■□□□□ 0.84
CCNFP41002 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCNFP41002 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.3■□□□□ 0.84
CCNFP41002 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCNFP41002 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNFP41002 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CCNFP41002 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.29■□□□□ 0.84
CCNFP41002 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCNFP41002 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 AC243732.1-201ENST00000612648 864 ntBASIC20.29■□□□□ 0.84
CCNFP41002 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
CCNFP41002 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNFP41002 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNFP41002 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.28■□□□□ 0.84
CCNFP41002 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CCNFP41002 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCNFP41002 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.28■□□□□ 0.84
CCNFP41002 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.28■□□□□ 0.84
CCNFP41002 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.28■□□□□ 0.84
CCNFP41002 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.28■□□□□ 0.84
CCNFP41002 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCNFP41002 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNFP41002 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.27■□□□□ 0.84
CCNFP41002 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.27■□□□□ 0.84
CCNFP41002 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms