Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 YGR161W-AYGR161W-A 1317 nt1.1□□□□□ -2.23
RTR1P40084 YBL100W-AYBL100W-A 1317 nt1.1□□□□□ -2.23
RTR1P40084 YCL020WYCL020W 1317 nt1.1□□□□□ -2.23
RTR1P40084 NUP145YGL092W 3954 nt1.09□□□□□ -2.23
RTR1P40084 SEM1YDR363W-A 270 nt1.09□□□□□ -2.23
RTR1P40084 YOL038C-AYOL038C-A 96 nt1.09□□□□□ -2.23
RTR1P40084 YCK3YER123W 1575 nt1.08□□□□□ -2.24
RTR1P40084 YJR140W-AYJR140W-A 150 nt1.08□□□□□ -2.24
RTR1P40084 RCN1YKL159C 636 nt1.08□□□□□ -2.24
RTR1P40084 RAD50YNL250W 3939 nt1.08□□□□□ -2.24
RTR1P40084 NUP188YML103C 4968 nt1.07□□□□□ -2.24
RTR1P40084 SGO1YOR073W 1773 nt1.07□□□□□ -2.24
RTR1P40084 CHZ1YER030W 462 nt1.07□□□□□ -2.24
RTR1P40084 YLL020CYLL020C 306 nt1.07□□□□□ -2.24
RTR1P40084 NOP15YNL110C 663 nt1.07□□□□□ -2.24
RTR1P40084 BI4Q0120 1917 nt1.07□□□□□ -2.24
RTR1P40084 SLX4YLR135W 2247 nt1.07□□□□□ -2.24
RTR1P40084 SMB1YER029C 591 nt1.06□□□□□ -2.24
RTR1P40084 YGL217CYGL217C 342 nt1.06□□□□□ -2.24
RTR1P40084 HIT1YJR055W 495 nt1.06□□□□□ -2.24
RTR1P40084 SDS22YKL193C 1017 nt1.06□□□□□ -2.24
RTR1P40084 VPS52YDR484W 1926 nt1.06□□□□□ -2.24
RTR1P40084 TIM10YHR005C-A 282 nt1.05□□□□□ -2.24
RTR1P40084 RPL42BYHR141C 321 nt1.05□□□□□ -2.24
RTR1P40084 tT(UGU)Q1tT(UGU)Q1 76 nt1.05□□□□□ -2.24
RTR1P40084 RPL42AYNL162W 321 nt1.05□□□□□ -2.24
RTR1P40084 YPL197CYPL197C 414 nt1.05□□□□□ -2.24
RTR1P40084 NUP157YER105C 4176 nt1.04□□□□□ -2.24
RTR1P40084 SWI4YER111C 3282 nt1.04□□□□□ -2.24
RTR1P40084 YHR054CYHR054C 1065 nt1.04□□□□□ -2.24
RTR1P40084 NBP1YLR457C 960 nt1.04□□□□□ -2.24
RTR1P40084 YMR013C-AYMR013C-A 150 nt1.04□□□□□ -2.24
RTR1P40084 RPL9BYNL067W 576 nt1.04□□□□□ -2.24
RTR1P40084 SCC2YDR180W 4482 nt1.04□□□□□ -2.24
RTR1P40084 YMR160WYMR160W 2451 nt1.03□□□□□ -2.24
RTR1P40084 YER023C-AYER023C-A 213 nt1.03□□□□□ -2.24
RTR1P40084 RTR1YER139C 681 nt1.03□□□□□ -2.24
RTR1P40084 YOR072W-AYOR072W-A 249 nt1.03□□□□□ -2.24
RTR1P40084 YCL046WYCL046W 324 nt1.03□□□□□ -2.24
RTR1P40084 YCL002CYCL002C 792 nt1.02□□□□□ -2.25
RTR1P40084 snR5snR5 204 nt1.01□□□□□ -2.25
RTR1P40084 GPM2YDL021W 936 nt1.01□□□□□ -2.25
RTR1P40084 snR79snR79 84 nt1.01□□□□□ -2.25
RTR1P40084 BMT5YIL096C 1011 nt1.01□□□□□ -2.25
RTR1P40084 DOP1YDR141C 5097 nt1.01□□□□□ -2.25
RTR1P40084 HDA3YPR179C 1968 nt1.01□□□□□ -2.25
RTR1P40084 PRM8YGL053W 714 nt1□□□□□ -2.25
RTR1P40084 YGR228WYGR228W 345 nt1□□□□□ -2.25
RTR1P40084 YKL111CYKL111C 336 nt1□□□□□ -2.25
RTR1P40084 DDR48YMR173W 1293 nt1□□□□□ -2.25
RTR1P40084 YMR175W-AYMR175W-A 195 nt1□□□□□ -2.25
RTR1P40084 YNL146C-AYNL146C-A 195 nt1□□□□□ -2.25
RTR1P40084 YOL014WYOL014W 375 nt1□□□□□ -2.25
RTR1P40084 YGL015CYGL015C 393 nt0.99□□□□□ -2.25
RTR1P40084 LRP1YHR081W 555 nt0.99□□□□□ -2.25
RTR1P40084 YML009C-AYML009C-A 327 nt0.99□□□□□ -2.25
RTR1P40084 YNL114CYNL114C 372 nt0.99□□□□□ -2.25
RTR1P40084 GDS1YOR355W 1569 nt0.99□□□□□ -2.25
RTR1P40084 YOR192C-AYOR192C-A 1317 nt0.98□□□□□ -2.25
RTR1P40084 SPT21YMR179W 2277 nt0.98□□□□□ -2.25
RTR1P40084 NHP2YDL208W 471 nt0.98□□□□□ -2.25
RTR1P40084 EMT1tM(CAU)D 73 nt0.98□□□□□ -2.25
RTR1P40084 EMT5tM(CAU)J1 73 nt0.98□□□□□ -2.25
RTR1P40084 EMT3tM(CAU)J2 73 nt0.98□□□□□ -2.25
RTR1P40084 EMT4tM(CAU)M 73 nt0.98□□□□□ -2.25
RTR1P40084 EMT2tM(CAU)O2 73 nt0.98□□□□□ -2.25
RTR1P40084 YAL066WYAL066W 309 nt0.98□□□□□ -2.25
RTR1P40084 YPR096CYPR096C 303 nt0.98□□□□□ -2.25
RTR1P40084 YCR100CYCR100C 951 nt0.97□□□□□ -2.25
RTR1P40084 YDL152WYDL152W 366 nt0.97□□□□□ -2.25
RTR1P40084 ZIP1YDR285W 2628 nt0.97□□□□□ -2.25
RTR1P40084 NUT1YGL151W 3399 nt0.96□□□□□ -2.26
RTR1P40084 KAP120YPL125W 3099 nt0.96□□□□□ -2.26
RTR1P40084 YHR028W-AYHR028W-A 321 nt0.96□□□□□ -2.26
RTR1P40084 YIR020CYIR020C 303 nt0.96□□□□□ -2.26
RTR1P40084 COX7YMR256C 183 nt0.96□□□□□ -2.26
RTR1P40084 STB6YKL072W 2301 nt0.96□□□□□ -2.26
RTR1P40084 SMC1YFL008W 3678 nt0.95□□□□□ -2.26
RTR1P40084 YDR521WYDR521W 336 nt0.95□□□□□ -2.26
RTR1P40084 APL3YBL037W 3078 nt0.95□□□□□ -2.26
RTR1P40084 PRP16YKR086W 3216 nt0.95□□□□□ -2.26
RTR1P40084 NOC3YLR002C 1992 nt0.94□□□□□ -2.26
RTR1P40084 MSS11YMR164C 2277 nt0.94□□□□□ -2.26
RTR1P40084 CMC4YMR194C-B 222 nt0.94□□□□□ -2.26
RTR1P40084 SWS2YNL081C 432 nt0.94□□□□□ -2.26
RTR1P40084 SVS1YPL163C 783 nt0.94□□□□□ -2.26
RTR1P40084 GEA2YEL022W 4380 nt0.94□□□□□ -2.26
RTR1P40084 SWI5YDR146C 2130 nt0.94□□□□□ -2.26
RTR1P40084 SEC1YDR164C 2175 nt0.93□□□□□ -2.26
RTR1P40084 BIR1YJR089W 2865 nt0.93□□□□□ -2.26
RTR1P40084 snR9snR9 187 nt0.93□□□□□ -2.26
RTR1P40084 YDR220CYDR220C 294 nt0.93□□□□□ -2.26
RTR1P40084 MND1YGL183C 660 nt0.93□□□□□ -2.26
RTR1P40084 YLR271WYLR271W 825 nt0.93□□□□□ -2.26
RTR1P40084 RPC10YHR143W-A 213 nt0.92□□□□□ -2.26
RTR1P40084 IPP1YBR011C 864 nt0.92□□□□□ -2.26
RTR1P40084 CDC39YCR093W 6327 nt0.92□□□□□ -2.26
RTR1P40084 YDR003W-AYDR003W-A 123 nt0.91□□□□□ -2.26
RTR1P40084 RPS18BYML026C 441 nt0.91□□□□□ -2.26
RTR1P40084 YBR012CYBR012C 420 nt0.91□□□□□ -2.26
Retrieved 100 of 7,029 protein–RNA pairs in 6.9 ms