Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
COL18A1P39060 AC073508.3-201ENST00000619697 1419 ntBASIC26.95■■□□□ 1.91
COL18A1P39060 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.95■■□□□ 1.91
COL18A1P39060 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
COL18A1P39060 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.91
COL18A1P39060 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC26.95■■□□□ 1.9
COL18A1P39060 TERF1P1-201ENST00000311003 1181 ntBASIC26.95■■□□□ 1.9
COL18A1P39060 AL049597.2-201ENST00000565575 961 ntBASIC26.95■■□□□ 1.9
COL18A1P39060 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
COL18A1P39060 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
COL18A1P39060 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL18A1P39060 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL18A1P39060 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL18A1P39060 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC26.95■■□□□ 1.9
COL18A1P39060 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.9
COL18A1P39060 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC26.95■■□□□ 1.9
COL18A1P39060 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
COL18A1P39060 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL18A1P39060 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC26.94■■□□□ 1.9
COL18A1P39060 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC26.94■■□□□ 1.9
COL18A1P39060 AC010947.1-201ENST00000623454 693 ntBASIC26.94■■□□□ 1.9
COL18A1P39060 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC26.94■■□□□ 1.9
COL18A1P39060 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.94■■□□□ 1.9
COL18A1P39060 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL18A1P39060 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.94■■□□□ 1.9
COL18A1P39060 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL18A1P39060 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL18A1P39060 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC26.94■■□□□ 1.9
COL18A1P39060 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC26.94■■□□□ 1.9
COL18A1P39060 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
COL18A1P39060 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC26.94■■□□□ 1.9
COL18A1P39060 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC26.94■■□□□ 1.9
COL18A1P39060 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
COL18A1P39060 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
COL18A1P39060 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
COL18A1P39060 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC26.93■■□□□ 1.9
COL18A1P39060 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC26.93■■□□□ 1.9
COL18A1P39060 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
COL18A1P39060 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL18A1P39060 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC26.93■■□□□ 1.9
COL18A1P39060 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
COL18A1P39060 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL18A1P39060 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 TUB-203ENST00000534099 1759 ntTSL 2 BASIC26.92■■□□□ 1.9
COL18A1P39060 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC26.92■■□□□ 1.9
COL18A1P39060 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC26.92■■□□□ 1.9
COL18A1P39060 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC26.92■■□□□ 1.9
COL18A1P39060 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC26.92■■□□□ 1.9
COL18A1P39060 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL18A1P39060 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.92■■□□□ 1.9
COL18A1P39060 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL18A1P39060 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
COL18A1P39060 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL18A1P39060 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC26.91■■□□□ 1.9
COL18A1P39060 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC26.91■■□□□ 1.9
COL18A1P39060 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL18A1P39060 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC26.91■■□□□ 1.9
COL18A1P39060 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL18A1P39060 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL18A1P39060 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL18A1P39060 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.9■■□□□ 1.9
COL18A1P39060 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL18A1P39060 KRT16P1-201ENST00000399124 1418 ntBASIC26.9■■□□□ 1.9
COL18A1P39060 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL18A1P39060 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL18A1P39060 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC26.9■■□□□ 1.9
COL18A1P39060 DYM-203ENST00000442713 2147 ntTSL 2 BASIC26.9■■□□□ 1.9
COL18A1P39060 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
COL18A1P39060 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL18A1P39060 SLC25A3P1-201ENST00000443844 931 ntBASIC26.9■■□□□ 1.9
COL18A1P39060 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC26.9■■□□□ 1.9
COL18A1P39060 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
COL18A1P39060 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL18A1P39060 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC26.89■■□□□ 1.9
COL18A1P39060 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC26.89■■□□□ 1.9
COL18A1P39060 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 ECEL1P1-201ENST00000373592 1742 ntBASIC26.89■■□□□ 1.9
COL18A1P39060 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC26.89■■□□□ 1.9
COL18A1P39060 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL18A1P39060 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL18A1P39060 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL18A1P39060 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
COL18A1P39060 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
COL18A1P39060 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL18A1P39060 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
COL18A1P39060 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC26.89■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms