Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.26■□□□□ 0.67
MSX2P35548 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
MSX2P35548 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.26■□□□□ 0.67
MSX2P35548 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
MSX2P35548 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.26■□□□□ 0.67
MSX2P35548 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX2P35548 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
MSX2P35548 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.25■□□□□ 0.67
MSX2P35548 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
MSX2P35548 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.25■□□□□ 0.67
MSX2P35548 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 BX842568.3-201ENST00000418104 571 ntBASIC19.25■□□□□ 0.67
MSX2P35548 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.25■□□□□ 0.67
MSX2P35548 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
MSX2P35548 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.25■□□□□ 0.67
MSX2P35548 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX2P35548 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
MSX2P35548 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.24■□□□□ 0.67
MSX2P35548 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.24■□□□□ 0.67
MSX2P35548 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.24■□□□□ 0.67
MSX2P35548 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
MSX2P35548 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
MSX2P35548 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
MSX2P35548 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MSX2P35548 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.24■□□□□ 0.67
MSX2P35548 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
MSX2P35548 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
MSX2P35548 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
MSX2P35548 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
MSX2P35548 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX2P35548 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.24■□□□□ 0.67
MSX2P35548 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.23■□□□□ 0.67
MSX2P35548 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.23■□□□□ 0.67
MSX2P35548 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.23■□□□□ 0.67
MSX2P35548 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
MSX2P35548 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
MSX2P35548 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
MSX2P35548 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.23■□□□□ 0.67
MSX2P35548 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.23■□□□□ 0.67
MSX2P35548 AC126544.1-201ENST00000580842 1059 ntBASIC19.23■□□□□ 0.67
MSX2P35548 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.23■□□□□ 0.67
MSX2P35548 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.23■□□□□ 0.67
MSX2P35548 AL035685.1-201ENST00000636663 812 ntBASIC19.23■□□□□ 0.67
MSX2P35548 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.23■□□□□ 0.67
MSX2P35548 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.23■□□□□ 0.67
MSX2P35548 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
MSX2P35548 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.23■□□□□ 0.67
MSX2P35548 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX2P35548 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.22■□□□□ 0.67
MSX2P35548 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.22■□□□□ 0.67
MSX2P35548 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms