Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.19■□□□□ 0.66
PTPN6P29350 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN6P29350 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN6P29350 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.19■□□□□ 0.66
PTPN6P29350 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN6P29350 AC011767.1-201ENST00000617410 1153 ntBASIC19.19■□□□□ 0.66
PTPN6P29350 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN6P29350 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.19■□□□□ 0.66
PTPN6P29350 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN6P29350 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
PTPN6P29350 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN6P29350 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN6P29350 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN6P29350 KRT8P36-201ENST00000489121 1440 ntBASIC19.18■□□□□ 0.66
PTPN6P29350 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTPN6P29350 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 MFSD11-216ENST00000590393 1141 ntBASIC19.18■□□□□ 0.66
PTPN6P29350 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTPN6P29350 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN6P29350 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTPN6P29350 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN6P29350 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN6P29350 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN6P29350 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 AC090192.1-201ENST00000517740 490 ntBASIC19.17■□□□□ 0.66
PTPN6P29350 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PTPN6P29350 SLC7A5P1-201ENST00000568957 537 ntBASIC19.17■□□□□ 0.66
PTPN6P29350 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 AC073111.5-205ENST00000641717 521 ntBASIC19.17■□□□□ 0.66
PTPN6P29350 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN6P29350 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTPN6P29350 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
PTPN6P29350 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN6P29350 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PTPN6P29350 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTPN6P29350 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN6P29350 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
PTPN6P29350 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PTPN6P29350 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.16■□□□□ 0.66
PTPN6P29350 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN6P29350 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.16■□□□□ 0.66
PTPN6P29350 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN6P29350 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PTPN6P29350 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN6P29350 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN6P29350 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN6P29350 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
PTPN6P29350 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PTPN6P29350 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN6P29350 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 CDCA4P2-201ENST00000441182 718 ntBASIC19.15■□□□□ 0.66
PTPN6P29350 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN6P29350 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN6P29350 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.15■□□□□ 0.66
PTPN6P29350 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN6P29350 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTPN6P29350 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PTPN6P29350 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTPN6P29350 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN6P29350 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms