Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.7■□□□□ 0.42
COL8A1P27658 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 AC087742.1-201ENST00000575880 1738 ntBASIC17.69■□□□□ 0.42
COL8A1P27658 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL8A1P27658 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.69■□□□□ 0.42
COL8A1P27658 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
COL8A1P27658 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.69■□□□□ 0.42
COL8A1P27658 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.69■□□□□ 0.42
COL8A1P27658 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.69■□□□□ 0.42
COL8A1P27658 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL8A1P27658 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL8A1P27658 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
COL8A1P27658 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL8A1P27658 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.68■□□□□ 0.42
COL8A1P27658 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL8A1P27658 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.68■□□□□ 0.42
COL8A1P27658 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.68■□□□□ 0.42
COL8A1P27658 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.68■□□□□ 0.42
COL8A1P27658 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.68■□□□□ 0.42
COL8A1P27658 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.68■□□□□ 0.42
COL8A1P27658 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.68■□□□□ 0.42
COL8A1P27658 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL8A1P27658 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
COL8A1P27658 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
COL8A1P27658 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL8A1P27658 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.68■□□□□ 0.42
COL8A1P27658 AC092053.2-201ENST00000640557 1818 ntBASIC17.68■□□□□ 0.42
COL8A1P27658 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL8A1P27658 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL8A1P27658 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL8A1P27658 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.67■□□□□ 0.42
COL8A1P27658 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL8A1P27658 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL8A1P27658 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL8A1P27658 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.67■□□□□ 0.42
COL8A1P27658 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.67■□□□□ 0.42
COL8A1P27658 AP002982.1-201ENST00000492365 877 ntBASIC17.67■□□□□ 0.42
COL8A1P27658 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.67■□□□□ 0.42
COL8A1P27658 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.67■□□□□ 0.42
COL8A1P27658 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL8A1P27658 AC124283.5-201ENST00000624661 1809 ntBASIC17.67■□□□□ 0.42
COL8A1P27658 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
COL8A1P27658 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.67■□□□□ 0.42
COL8A1P27658 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
COL8A1P27658 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL8A1P27658 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.66■□□□□ 0.42
COL8A1P27658 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL8A1P27658 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 AK4P3-201ENST00000418260 669 ntBASIC17.66■□□□□ 0.42
COL8A1P27658 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.66■□□□□ 0.42
COL8A1P27658 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.66■□□□□ 0.42
COL8A1P27658 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL8A1P27658 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
COL8A1P27658 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.66■□□□□ 0.42
COL8A1P27658 AC116050.2-201ENST00000612102 1779 ntBASIC17.66■□□□□ 0.42
COL8A1P27658 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL8A1P27658 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.65■□□□□ 0.42
COL8A1P27658 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.65■□□□□ 0.42
COL8A1P27658 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.65■□□□□ 0.42
COL8A1P27658 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL8A1P27658 CR392000.1-201ENST00000624770 1228 ntBASIC17.65■□□□□ 0.42
COL8A1P27658 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.65■□□□□ 0.42
COL8A1P27658 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.65■□□□□ 0.42
COL8A1P27658 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.65■□□□□ 0.42
COL8A1P27658 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms