Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
FREM3P0C091 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.38■□□□□ 0.53
FREM3P0C091 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.38■□□□□ 0.53
FREM3P0C091 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.38■□□□□ 0.53
FREM3P0C091 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 PTBP1P-201ENST00000554374 1601 ntBASIC18.38■□□□□ 0.53
FREM3P0C091 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
FREM3P0C091 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
FREM3P0C091 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.38■□□□□ 0.53
FREM3P0C091 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.38■□□□□ 0.53
FREM3P0C091 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.38■□□□□ 0.53
FREM3P0C091 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
FREM3P0C091 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
FREM3P0C091 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.38■□□□□ 0.53
FREM3P0C091 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.38■□□□□ 0.53
FREM3P0C091 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FREM3P0C091 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 AC092368.3-202ENST00000574180 1591 ntBASIC18.37■□□□□ 0.53
FREM3P0C091 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.37■□□□□ 0.53
FREM3P0C091 AC069544.1-201ENST00000609399 999 ntBASIC18.37■□□□□ 0.53
FREM3P0C091 KRT8P36-201ENST00000489121 1440 ntBASIC18.37■□□□□ 0.53
FREM3P0C091 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.37■□□□□ 0.53
FREM3P0C091 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.37■□□□□ 0.53
FREM3P0C091 FP700111.2-201ENST00000619190 1892 ntBASIC18.37■□□□□ 0.53
FREM3P0C091 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.37■□□□□ 0.53
FREM3P0C091 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FREM3P0C091 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.37■□□□□ 0.53
FREM3P0C091 FAM201B-201ENST00000458407 597 ntBASIC18.37■□□□□ 0.53
FREM3P0C091 AC093827.2-201ENST00000512654 315 ntBASIC18.37■□□□□ 0.53
FREM3P0C091 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
FREM3P0C091 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.36■□□□□ 0.53
FREM3P0C091 PRORSD1P-201ENST00000295112 541 ntBASIC18.36■□□□□ 0.53
FREM3P0C091 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.36■□□□□ 0.53
FREM3P0C091 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
FREM3P0C091 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.36■□□□□ 0.53
FREM3P0C091 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
FREM3P0C091 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
FREM3P0C091 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
FREM3P0C091 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
FREM3P0C091 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.35■□□□□ 0.53
FREM3P0C091 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.35■□□□□ 0.53
FREM3P0C091 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 AC006058.3-201ENST00000606217 1069 ntBASIC18.35■□□□□ 0.53
FREM3P0C091 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.35■□□□□ 0.53
FREM3P0C091 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
FREM3P0C091 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FREM3P0C091 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FREM3P0C091 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.35■□□□□ 0.53
FREM3P0C091 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
FREM3P0C091 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FREM3P0C091 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.35■□□□□ 0.53
FREM3P0C091 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
FREM3P0C091 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms