Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RAPGEF3O95398 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RAPGEF3O95398 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RAPGEF3O95398 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RAPGEF3O95398 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC30.63■■■□□ 2.49
RAPGEF3O95398 DUSP5P1-201ENST00000441325 1139 ntBASIC30.63■■■□□ 2.49
RAPGEF3O95398 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC30.63■■■□□ 2.49
RAPGEF3O95398 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 KRT18P48-201ENST00000434763 852 ntBASIC30.62■■■□□ 2.49
RAPGEF3O95398 AC009947.2-201ENST00000444014 672 ntBASIC30.62■■■□□ 2.49
RAPGEF3O95398 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
RAPGEF3O95398 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC30.62■■■□□ 2.49
RAPGEF3O95398 EXOC3-AS1-202ENST00000623673 1663 ntBASIC30.62■■■□□ 2.49
RAPGEF3O95398 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 AC117947.1-201ENST00000427448 529 ntBASIC30.61■■■□□ 2.49
RAPGEF3O95398 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC30.61■■■□□ 2.49
RAPGEF3O95398 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC30.61■■■□□ 2.49
RAPGEF3O95398 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC30.61■■■□□ 2.49
RAPGEF3O95398 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RAPGEF3O95398 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 TSPY14P-201ENST00000303979 915 ntBASIC30.6■■■□□ 2.49
RAPGEF3O95398 COPE-203ENST00000351079 907 ntTSL 2 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 BX664615.1-201ENST00000443558 458 ntBASIC30.6■■■□□ 2.49
RAPGEF3O95398 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
RAPGEF3O95398 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 EGLN1P1-201ENST00000531623 762 ntBASIC30.6■■■□□ 2.49
RAPGEF3O95398 CLN6-204ENST00000564752 900 ntTSL 3 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 FAM87A-204ENST00000613235 858 ntBASIC30.6■■■□□ 2.49
RAPGEF3O95398 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
RAPGEF3O95398 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RAPGEF3O95398 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RAPGEF3O95398 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RAPGEF3O95398 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RAPGEF3O95398 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
RAPGEF3O95398 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 AC091390.4-202ENST00000476426 537 ntBASIC30.59■■■□□ 2.49
RAPGEF3O95398 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC30.59■■■□□ 2.49
RAPGEF3O95398 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RAPGEF3O95398 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 COPS8-203ENST00000409334 794 ntTSL 5 BASIC30.58■■■□□ 2.49
RAPGEF3O95398 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
RAPGEF3O95398 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC30.58■■■□□ 2.49
RAPGEF3O95398 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RAPGEF3O95398 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
RAPGEF3O95398 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RAPGEF3O95398 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
RAPGEF3O95398 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
RAPGEF3O95398 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RAPGEF3O95398 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 FAM8A6P-201ENST00000407496 1135 ntBASIC30.57■■■□□ 2.48
RAPGEF3O95398 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 C2orf69P3-201ENST00000565542 1120 ntBASIC30.57■■■□□ 2.48
RAPGEF3O95398 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 MED25-212ENST00000618715 1467 ntTSL 5 BASIC30.57■■■□□ 2.48
RAPGEF3O95398 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RAPGEF3O95398 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms