Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SEMA3DO95025 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SEMA3DO95025 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SEMA3DO95025 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SEMA3DO95025 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.35■□□□□ 0.69
SEMA3DO95025 OR10C1-204ENST00000622521 1039 ntBASIC19.35■□□□□ 0.69
SEMA3DO95025 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 AL512408.1-201ENST00000569378 2000 ntBASIC19.35■□□□□ 0.69
SEMA3DO95025 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.35■□□□□ 0.69
SEMA3DO95025 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SEMA3DO95025 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SEMA3DO95025 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SEMA3DO95025 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SEMA3DO95025 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SEMA3DO95025 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SEMA3DO95025 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.34■□□□□ 0.69
SEMA3DO95025 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SEMA3DO95025 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SEMA3DO95025 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SEMA3DO95025 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.34■□□□□ 0.69
SEMA3DO95025 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SEMA3DO95025 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.34■□□□□ 0.69
SEMA3DO95025 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.34■□□□□ 0.69
SEMA3DO95025 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SEMA3DO95025 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SEMA3DO95025 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SEMA3DO95025 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.33■□□□□ 0.69
SEMA3DO95025 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.33■□□□□ 0.69
SEMA3DO95025 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SEMA3DO95025 AC007952.6-201ENST00000573168 2673 ntBASIC19.33■□□□□ 0.69
SEMA3DO95025 AC003957.1-201ENST00000625108 2673 ntBASIC19.33■□□□□ 0.69
SEMA3DO95025 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SEMA3DO95025 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SEMA3DO95025 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.33■□□□□ 0.68
SEMA3DO95025 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.33■□□□□ 0.68
SEMA3DO95025 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.33■□□□□ 0.68
SEMA3DO95025 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.33■□□□□ 0.68
SEMA3DO95025 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.33■□□□□ 0.68
SEMA3DO95025 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SEMA3DO95025 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SEMA3DO95025 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.33■□□□□ 0.68
SEMA3DO95025 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
SEMA3DO95025 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SEMA3DO95025 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.33■□□□□ 0.68
SEMA3DO95025 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SEMA3DO95025 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SEMA3DO95025 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
SEMA3DO95025 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.33■□□□□ 0.68
SEMA3DO95025 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SEMA3DO95025 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SEMA3DO95025 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SEMA3DO95025 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.32■□□□□ 0.68
SEMA3DO95025 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.32■□□□□ 0.68
SEMA3DO95025 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.32■□□□□ 0.68
SEMA3DO95025 AL137784.2-201ENST00000607332 1000 ntBASIC19.32■□□□□ 0.68
SEMA3DO95025 AC080038.1-201ENST00000611274 1154 ntBASIC19.32■□□□□ 0.68
SEMA3DO95025 IKBKGP1-201ENST00000612193 1073 ntBASIC19.32■□□□□ 0.68
SEMA3DO95025 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
SEMA3DO95025 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SEMA3DO95025 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.31■□□□□ 0.68
SEMA3DO95025 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.31■□□□□ 0.68
SEMA3DO95025 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 AC004911.1-201ENST00000416316 871 ntBASIC19.31■□□□□ 0.68
SEMA3DO95025 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.31■□□□□ 0.68
SEMA3DO95025 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.31■□□□□ 0.68
SEMA3DO95025 AC005181.1-201ENST00000604782 1256 ntBASIC19.31■□□□□ 0.68
SEMA3DO95025 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms