Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.68■□□□□ 0.9
HOXC11O43248 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC11O43248 AC110285.5-201ENST00000611501 352 ntBASIC20.68■□□□□ 0.9
HOXC11O43248 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
HOXC11O43248 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HOXC11O43248 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 FEM1AP4-201ENST00000443167 1987 ntBASIC20.67■□□□□ 0.9
HOXC11O43248 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HOXC11O43248 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
HOXC11O43248 KRASP1-201ENST00000407852 552 ntBASIC20.67■□□□□ 0.9
HOXC11O43248 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXC11O43248 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HOXC11O43248 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC11O43248 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXC11O43248 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXC11O43248 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXC11O43248 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HOXC11O43248 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXC11O43248 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXC11O43248 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXC11O43248 AC233702.5-201ENST00000584107 538 ntBASIC20.66■□□□□ 0.9
HOXC11O43248 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXC11O43248 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC11O43248 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
HOXC11O43248 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HOXC11O43248 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXC11O43248 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXC11O43248 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXC11O43248 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC11O43248 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC11O43248 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC11O43248 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.64■□□□□ 0.9
HOXC11O43248 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.9
HOXC11O43248 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXC11O43248 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HOXC11O43248 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXC11O43248 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC11O43248 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HOXC11O43248 RPS2P55-201ENST00000397318 883 ntBASIC20.64■□□□□ 0.89
HOXC11O43248 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXC11O43248 AC107956.1-201ENST00000494359 873 ntBASIC20.64■□□□□ 0.89
HOXC11O43248 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXC11O43248 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXC11O43248 AL121829.2-201ENST00000620908 328 ntBASIC20.64■□□□□ 0.89
HOXC11O43248 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC11O43248 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC11O43248 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC11O43248 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC11O43248 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HOXC11O43248 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC11O43248 SNORA78-201ENST00000459373 127 ntBASIC20.63■□□□□ 0.89
HOXC11O43248 PRKY-204ENST00000533551 1019 ntBASIC20.63■□□□□ 0.89
HOXC11O43248 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC11O43248 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HOXC11O43248 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC11O43248 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC11O43248 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.63■□□□□ 0.89
HOXC11O43248 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HOXC11O43248 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms