Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
FOXN3O00409 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
FOXN3O00409 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.68■■□□□ 1.06
FOXN3O00409 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
FOXN3O00409 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.68■■□□□ 1.06
FOXN3O00409 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.68■■□□□ 1.06
FOXN3O00409 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.68■■□□□ 1.06
FOXN3O00409 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.68■■□□□ 1.06
FOXN3O00409 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
FOXN3O00409 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXN3O00409 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXN3O00409 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXN3O00409 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXN3O00409 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXN3O00409 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXN3O00409 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXN3O00409 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXN3O00409 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXN3O00409 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.67■■□□□ 1.06
FOXN3O00409 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.67■■□□□ 1.06
FOXN3O00409 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXN3O00409 TCF3P1-201ENST00000423021 1937 ntBASIC21.67■■□□□ 1.06
FOXN3O00409 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXN3O00409 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
FOXN3O00409 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.66■■□□□ 1.06
FOXN3O00409 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.66■■□□□ 1.06
FOXN3O00409 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
FOXN3O00409 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXN3O00409 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXN3O00409 AC080038.1-201ENST00000611274 1154 ntBASIC21.66■■□□□ 1.06
FOXN3O00409 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXN3O00409 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXN3O00409 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FOXN3O00409 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.65■■□□□ 1.06
FOXN3O00409 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
FOXN3O00409 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
FOXN3O00409 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.65■■□□□ 1.06
FOXN3O00409 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
FOXN3O00409 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.65■■□□□ 1.06
FOXN3O00409 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.65■■□□□ 1.06
FOXN3O00409 AL355472.2-201ENST00000422958 438 ntBASIC21.65■■□□□ 1.06
FOXN3O00409 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.65■■□□□ 1.06
FOXN3O00409 AC069236.1-201ENST00000604339 616 ntBASIC21.65■■□□□ 1.06
FOXN3O00409 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.65■■□□□ 1.06
FOXN3O00409 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
FOXN3O00409 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FOXN3O00409 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
FOXN3O00409 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.64■■□□□ 1.06
FOXN3O00409 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXN3O00409 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.64■■□□□ 1.06
FOXN3O00409 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
FOXN3O00409 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXN3O00409 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXN3O00409 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 KRT18P68-201ENST00000392293 1000 ntBASIC21.64■■□□□ 1.05
FOXN3O00409 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.64■■□□□ 1.05
FOXN3O00409 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.64■■□□□ 1.05
FOXN3O00409 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
FOXN3O00409 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
FOXN3O00409 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
FOXN3O00409 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXN3O00409 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXN3O00409 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
FOXN3O00409 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.63■■□□□ 1.05
FOXN3O00409 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms