Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 AL845331.1-201ENST00000424978 1190 ntBASIC15.87■□□□□ 0.13
COL6A5A8TX70 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 COX11P1-201ENST00000489116 835 ntBASIC15.87■□□□□ 0.13
COL6A5A8TX70 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 ANOS2P-203ENST00000472227 1816 ntBASIC15.86■□□□□ 0.13
COL6A5A8TX70 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 AL022342.1-201ENST00000400363 863 ntBASIC15.86■□□□□ 0.13
COL6A5A8TX70 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A5A8TX70 NARF-205ENST00000412079 1760 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A5A8TX70 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A5A8TX70 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 AL445675.2-201ENST00000620291 557 ntBASIC15.85■□□□□ 0.13
COL6A5A8TX70 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A5A8TX70 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 LINC01124-201ENST00000409786 2117 ntBASIC15.84■□□□□ 0.13
COL6A5A8TX70 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC15.84■□□□□ 0.13
COL6A5A8TX70 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 FAAHP1-202ENST00000446499 1238 ntBASIC15.84■□□□□ 0.13
COL6A5A8TX70 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A5A8TX70 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A5A8TX70 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
COL6A5A8TX70 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A5A8TX70 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
COL6A5A8TX70 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
COL6A5A8TX70 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A5A8TX70 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A5A8TX70 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A5A8TX70 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 B3GAT3P1-201ENST00000471720 806 ntBASIC15.83■□□□□ 0.12
COL6A5A8TX70 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A5A8TX70 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A5A8TX70 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A5A8TX70 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A5A8TX70 AL359075.1-203ENST00000462729 1002 ntBASIC15.82■□□□□ 0.12
COL6A5A8TX70 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 DGCR10-201ENST00000609839 495 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms