Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV41A0A0B4J266 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 RHEB-204ENST00000472642 900 ntTSL 3 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 EMC9-206ENST00000560403 872 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 AC098934.4-201ENST00000564127 592 ntBASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.92■□□□□ 0.14
TRAV41A0A0B4J266 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV41A0A0B4J266 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 APTR-205ENST00000447009 902 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRAV41A0A0B4J266 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV41A0A0B4J266 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV41A0A0B4J266 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms