Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 KRT16P5-201ENST00000455284 522 ntBASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 AF186192.3-201ENST00000583427 947 ntBASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPF3AQ9H1J1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 AC011484.1-201ENST00000377652 1995 ntBASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 AP003071.4-201ENST00000562276 1284 ntBASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.65■■□□□ 1.22
UPF3AQ9H1J1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
UPF3AQ9H1J1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
UPF3AQ9H1J1 HTR7P1-201ENST00000538670 1336 ntBASIC22.64■■□□□ 1.22
UPF3AQ9H1J1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
UPF3AQ9H1J1 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.64■■□□□ 1.21
UPF3AQ9H1J1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPF3AQ9H1J1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 AL353807.1-201ENST00000427475 662 ntBASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 CD177P1-201ENST00000606252 935 ntBASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms