Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC145285.6-201ENST00000604632 637 ntBASIC26.51■■□□□ 1.83
SHANK3Q9BYB0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC26.51■■□□□ 1.83
SHANK3Q9BYB0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC26.51■■□□□ 1.83
SHANK3Q9BYB0 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 DUT-205ENST00000558813 769 ntTSL 2 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHANK3Q9BYB0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 DECR2-212ENST00000627716 352 ntTSL 2 BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 KRT8P36-201ENST00000489121 1440 ntBASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.49■■□□□ 1.83
SHANK3Q9BYB0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 AC113347.1-201ENST00000413321 391 ntBASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC26.48■■□□□ 1.83
SHANK3Q9BYB0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC26.47■■□□□ 1.83
SHANK3Q9BYB0 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 AC092865.7-201ENST00000641832 219 ntBASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SHANK3Q9BYB0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 F2R-202ENST00000505600 442 ntTSL 2 BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 AP000525.1-201ENST00000608286 694 ntBASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.45■■□□□ 1.83
SHANK3Q9BYB0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC26.45■■□□□ 1.82
SHANK3Q9BYB0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 NIFKP9-201ENST00000419265 221 ntBASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 ECEL1P1-201ENST00000373592 1742 ntBASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SHANK3Q9BYB0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC26.43■■□□□ 1.82
SHANK3Q9BYB0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms