Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 AL024507.2-201ENST00000606070 2574 ntBASIC19.81■□□□□ 0.76
LMX1AQ8TE12 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 MIR2861-201ENST00000636310 90 ntBASIC19.8■□□□□ 0.76
LMX1AQ8TE12 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.8■□□□□ 0.76
LMX1AQ8TE12 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 KRT8P36-201ENST00000489121 1440 ntBASIC19.79■□□□□ 0.76
LMX1AQ8TE12 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 AC121338.2-201ENST00000622535 1744 ntBASIC19.79■□□□□ 0.76
LMX1AQ8TE12 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
LMX1AQ8TE12 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 AL049796.1-201ENST00000565336 1766 ntBASIC19.78■□□□□ 0.76
LMX1AQ8TE12 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 AC133681.1-201ENST00000465482 601 ntBASIC19.78■□□□□ 0.76
LMX1AQ8TE12 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1AQ8TE12 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 AC110285.5-201ENST00000611501 352 ntBASIC19.77■□□□□ 0.76
LMX1AQ8TE12 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1AQ8TE12 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.77■□□□□ 0.75
LMX1AQ8TE12 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.75
LMX1AQ8TE12 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms