Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC89Q8N998 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCDC89Q8N998 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC89Q8N998 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC89Q8N998 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC89Q8N998 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC89Q8N998 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 AC004854.2-201ENST00000608450 1441 ntBASIC20.97■□□□□ 0.95
CCDC89Q8N998 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CCDC89Q8N998 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC89Q8N998 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC89Q8N998 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC89Q8N998 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC89Q8N998 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 AC243732.1-201ENST00000612648 864 ntBASIC20.95■□□□□ 0.94
CCDC89Q8N998 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC89Q8N998 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC89Q8N998 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC89Q8N998 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC89Q8N998 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC89Q8N998 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC89Q8N998 RBM17P2-201ENST00000616397 1405 ntBASIC20.94■□□□□ 0.94
CCDC89Q8N998 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC89Q8N998 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC89Q8N998 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC89Q8N998 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 SMG8-203ENST00000578922 2178 ntBASIC20.93■□□□□ 0.94
CCDC89Q8N998 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
CCDC89Q8N998 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CCDC89Q8N998 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC89Q8N998 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC89Q8N998 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms