Protein–RNA interactions for Protein: Q8N6Y1

PCDH20, Protocadherin-20, humanhuman

Known RBP Predictions only

Length 951 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH20Q8N6Y1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH20Q8N6Y1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH20Q8N6Y1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH20Q8N6Y1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
PCDH20Q8N6Y1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH20Q8N6Y1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH20Q8N6Y1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 RNA5SP413-201ENST00000516373 109 ntBASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 MIR2861-201ENST00000636310 90 ntBASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
PCDH20Q8N6Y1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
PCDH20Q8N6Y1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 C2orf69P4-201ENST00000565394 541 ntBASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH20Q8N6Y1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.64■□□□□ 0.9
PCDH20Q8N6Y1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH20Q8N6Y1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms