Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 HMGA1P5-201ENST00000412453 271 ntBASIC11.22□□□□□ -0.61
UBR4Q5T4S7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 CR392000.1-201ENST00000624770 1228 ntBASIC11.22□□□□□ -0.61
UBR4Q5T4S7 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.61
UBR4Q5T4S7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 AC004870.1-201ENST00000315132 882 ntBASIC11.21□□□□□ -0.61
UBR4Q5T4S7 AC092364.2-202ENST00000597012 1073 ntBASIC11.21□□□□□ -0.61
UBR4Q5T4S7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 MCRIP2P1-201ENST00000394346 511 ntBASIC11.21□□□□□ -0.61
UBR4Q5T4S7 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 AC083849.1-201ENST00000615227 514 ntBASIC11.21□□□□□ -0.61
UBR4Q5T4S7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
UBR4Q5T4S7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 DGCR10-201ENST00000609839 495 ntBASIC11.21□□□□□ -0.62
UBR4Q5T4S7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
UBR4Q5T4S7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 C2orf69P3-201ENST00000565542 1120 ntBASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 NPAP1P7-201ENST00000613027 823 ntBASIC11.2□□□□□ -0.62
UBR4Q5T4S7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 LINC01960-201ENST00000563759 1884 ntBASIC11.2□□□□□ -0.62
UBR4Q5T4S7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 KRT18P1-202ENST00000452408 1331 ntBASIC11.2□□□□□ -0.62
UBR4Q5T4S7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 BX842568.4-201ENST00000421222 227 ntBASIC11.2□□□□□ -0.62
UBR4Q5T4S7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
UBR4Q5T4S7 HLA-A-201ENST00000376802 1334 ntBASIC11.19□□□□□ -0.62
UBR4Q5T4S7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 NIFKP9-201ENST00000419265 221 ntBASIC11.19□□□□□ -0.62
UBR4Q5T4S7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC11.19□□□□□ -0.62
UBR4Q5T4S7 POLD2P1-201ENST00000511220 997 ntBASIC11.19□□□□□ -0.62
UBR4Q5T4S7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms