Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 AL591742.1-201ENST00000604433 565 ntBASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC40Q4G0X9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
CCDC40Q4G0X9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 KRT8P36-201ENST00000489121 1440 ntBASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC40Q4G0X9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 AC112907.3-201ENST00000577781 2400 ntBASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 AC013268.1-206ENST00000638368 961 ntBASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 AC112229.1-201ENST00000639295 961 ntBASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 AC099778.1-201ENST00000568593 1911 ntBASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC40Q4G0X9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 SMG8-203ENST00000578922 2178 ntBASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 MFSD11-216ENST00000590393 1141 ntBASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC40Q4G0X9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms