Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 ECEL1P2-202ENST00000465689 757 ntBASIC21.7■■□□□ 1.06
CHD9Q3L8U1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHD9Q3L8U1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 KRT126P-201ENST00000549467 1181 ntBASIC21.69■■□□□ 1.06
CHD9Q3L8U1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 AL356652.1-201ENST00000615962 565 ntBASIC21.69■■□□□ 1.06
CHD9Q3L8U1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CHD9Q3L8U1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 KRT16P1-201ENST00000399124 1418 ntBASIC21.68■■□□□ 1.06
CHD9Q3L8U1 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CHD9Q3L8U1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 AC091076.1-201ENST00000610741 619 ntBASIC21.67■■□□□ 1.06
CHD9Q3L8U1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHD9Q3L8U1 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 MESTP1-201ENST00000404287 994 ntBASIC21.66■■□□□ 1.06
CHD9Q3L8U1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.66■■□□□ 1.06
CHD9Q3L8U1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.66■■□□□ 1.06
CHD9Q3L8U1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 TPM4P1-201ENST00000436100 807 ntBASIC21.65■■□□□ 1.06
CHD9Q3L8U1 AC027702.1-201ENST00000563810 1770 ntBASIC21.65■■□□□ 1.06
CHD9Q3L8U1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.65■■□□□ 1.06
CHD9Q3L8U1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHD9Q3L8U1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.64■■□□□ 1.06
CHD9Q3L8U1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHD9Q3L8U1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CHD9Q3L8U1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHD9Q3L8U1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CHD9Q3L8U1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms