Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL845331.1-201ENST00000424978 1190 ntBASIC14.84□□□□□ -0.03
PRKDCP78527 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.84□□□□□ -0.03
PRKDCP78527 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC14.84□□□□□ -0.03
PRKDCP78527 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.84□□□□□ -0.03
PRKDCP78527 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PRKDCP78527 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PRKDCP78527 LIN28AP1-201ENST00000429574 405 ntBASIC14.83□□□□□ -0.03
PRKDCP78527 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.83□□□□□ -0.03
PRKDCP78527 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.83□□□□□ -0.03
PRKDCP78527 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.83□□□□□ -0.03
PRKDCP78527 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
PRKDCP78527 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
PRKDCP78527 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PRKDCP78527 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC14.83□□□□□ -0.04
PRKDCP78527 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.83□□□□□ -0.04
PRKDCP78527 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
PRKDCP78527 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PRKDCP78527 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PRKDCP78527 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PRKDCP78527 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.83□□□□□ -0.04
PRKDCP78527 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PRKDCP78527 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC14.83□□□□□ -0.04
PRKDCP78527 AC068473.5-201ENST00000616428 2072 ntBASIC14.83□□□□□ -0.04
PRKDCP78527 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
PRKDCP78527 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC14.82□□□□□ -0.04
PRKDCP78527 NARF-205ENST00000412079 1760 ntTSL 5 BASIC14.82□□□□□ -0.04
PRKDCP78527 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC14.82□□□□□ -0.04
PRKDCP78527 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.82□□□□□ -0.04
PRKDCP78527 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PRKDCP78527 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PCED1CP-201ENST00000419887 785 ntBASIC14.82□□□□□ -0.04
PRKDCP78527 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.82□□□□□ -0.04
PRKDCP78527 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.82□□□□□ -0.04
PRKDCP78527 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 AC142381.3-201ENST00000568208 1670 ntBASIC14.82□□□□□ -0.04
PRKDCP78527 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PRKDCP78527 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC14.82□□□□□ -0.04
PRKDCP78527 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.82□□□□□ -0.04
PRKDCP78527 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC14.82□□□□□ -0.04
PRKDCP78527 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 AC009078.2-202ENST00000463353 338 ntBASIC14.82□□□□□ -0.04
PRKDCP78527 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.82□□□□□ -0.04
PRKDCP78527 AC012313.10-201ENST00000623509 926 ntBASIC14.82□□□□□ -0.04
PRKDCP78527 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PRKDCP78527 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC14.82□□□□□ -0.04
PRKDCP78527 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC14.82□□□□□ -0.04
PRKDCP78527 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.81□□□□□ -0.04
PRKDCP78527 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
PRKDCP78527 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC14.81□□□□□ -0.04
PRKDCP78527 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.81□□□□□ -0.04
PRKDCP78527 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.81□□□□□ -0.04
PRKDCP78527 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.81□□□□□ -0.04
PRKDCP78527 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PRKDCP78527 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.81□□□□□ -0.04
PRKDCP78527 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.81□□□□□ -0.04
PRKDCP78527 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
PRKDCP78527 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PRKDCP78527 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PRKDCP78527 B3GAT3P1-201ENST00000471720 806 ntBASIC14.81□□□□□ -0.04
PRKDCP78527 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC14.8□□□□□ -0.04
PRKDCP78527 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PRKDCP78527 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC14.8□□□□□ -0.04
PRKDCP78527 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.8□□□□□ -0.04
PRKDCP78527 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.8□□□□□ -0.04
PRKDCP78527 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms