Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDH11P55287 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDH11P55287 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.51■□□□□ 0.55
CDH11P55287 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CDH11P55287 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.51■□□□□ 0.55
CDH11P55287 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CDH11P55287 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 KRT18P11-201ENST00000435214 1283 ntBASIC18.51■□□□□ 0.55
CDH11P55287 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH11P55287 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.51■□□□□ 0.55
CDH11P55287 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CDH11P55287 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH11P55287 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.5■□□□□ 0.55
CDH11P55287 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CDH11P55287 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.5■□□□□ 0.55
CDH11P55287 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH11P55287 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH11P55287 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.5■□□□□ 0.55
CDH11P55287 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH11P55287 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CDH11P55287 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.5■□□□□ 0.55
CDH11P55287 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.5■□□□□ 0.55
CDH11P55287 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH11P55287 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH11P55287 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CDH11P55287 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH11P55287 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH11P55287 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CDH11P55287 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CDH11P55287 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH11P55287 AC104187.1-201ENST00000607510 612 ntBASIC18.49■□□□□ 0.55
CDH11P55287 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.49■□□□□ 0.55
CDH11P55287 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH11P55287 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CDH11P55287 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH11P55287 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH11P55287 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CDH11P55287 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 AC073111.5-205ENST00000641717 521 ntBASIC18.48■□□□□ 0.55
CDH11P55287 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH11P55287 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH11P55287 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms