Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.09■□□□□ 0.97
CDH6P55285 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 AC087633.2-202ENST00000565166 1439 ntBASIC21.09■□□□□ 0.97
CDH6P55285 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH6P55285 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH6P55285 PCDHAC2-203ENST00000615316 3011 ntBASIC21.08■□□□□ 0.97
CDH6P55285 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDH6P55285 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.08■□□□□ 0.97
CDH6P55285 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH6P55285 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.08■□□□□ 0.97
CDH6P55285 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH6P55285 PGM5P4-201ENST00000421970 445 ntBASIC21.08■□□□□ 0.97
CDH6P55285 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH6P55285 RARRES2P4-201ENST00000514074 484 ntBASIC21.08■□□□□ 0.97
CDH6P55285 SMG8-203ENST00000578922 2178 ntBASIC21.08■□□□□ 0.97
CDH6P55285 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.08■□□□□ 0.97
CDH6P55285 AC231657.2-201ENST00000624556 255 ntBASIC21.08■□□□□ 0.97
CDH6P55285 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CDH6P55285 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDH6P55285 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CDH6P55285 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.08■□□□□ 0.96
CDH6P55285 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.08■□□□□ 0.96
CDH6P55285 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDH6P55285 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 AC007322.1-201ENST00000426983 750 ntBASIC21.07■□□□□ 0.96
CDH6P55285 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.07■□□□□ 0.96
CDH6P55285 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 AL356652.1-201ENST00000615962 565 ntBASIC21.07■□□□□ 0.96
CDH6P55285 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.07■□□□□ 0.96
CDH6P55285 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CDH6P55285 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH6P55285 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.07■□□□□ 0.96
CDH6P55285 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH6P55285 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.06■□□□□ 0.96
CDH6P55285 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH6P55285 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
CDH6P55285 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH6P55285 CYP2T1P-201ENST00000432607 1285 ntBASIC21.06■□□□□ 0.96
CDH6P55285 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.06■□□□□ 0.96
CDH6P55285 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.06■□□□□ 0.96
CDH6P55285 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH6P55285 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.06■□□□□ 0.96
CDH6P55285 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH6P55285 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CDH6P55285 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.06■□□□□ 0.96
CDH6P55285 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CDH6P55285 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 AC112907.3-201ENST00000577781 2400 ntBASIC21.06■□□□□ 0.96
CDH6P55285 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH6P55285 AC099778.1-201ENST00000568593 1911 ntBASIC21.06■□□□□ 0.96
CDH6P55285 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.05■□□□□ 0.96
CDH6P55285 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
CDH6P55285 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CDH6P55285 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.05■□□□□ 0.96
CDH6P55285 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.05■□□□□ 0.96
CDH6P55285 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.05■□□□□ 0.96
CDH6P55285 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.05■□□□□ 0.96
CDH6P55285 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CDH6P55285 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH6P55285 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.05■□□□□ 0.96
CDH6P55285 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH6P55285 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CDH6P55285 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.04■□□□□ 0.96
CDH6P55285 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH6P55285 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CDH6P55285 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
CDH6P55285 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms