Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC1P18887 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC1P18887 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
XRCC1P18887 AC100791.3-201ENST00000617619 330 ntBASIC20.17■□□□□ 0.82
XRCC1P18887 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC1P18887 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
XRCC1P18887 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC1P18887 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.17■□□□□ 0.82
XRCC1P18887 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC1P18887 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
XRCC1P18887 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.17■□□□□ 0.82
XRCC1P18887 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
XRCC1P18887 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.16■□□□□ 0.82
XRCC1P18887 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.16■□□□□ 0.82
XRCC1P18887 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.16■□□□□ 0.82
XRCC1P18887 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.16■□□□□ 0.82
XRCC1P18887 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.16■□□□□ 0.82
XRCC1P18887 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC1P18887 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.16■□□□□ 0.82
XRCC1P18887 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC1P18887 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.15■□□□□ 0.82
XRCC1P18887 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
XRCC1P18887 BX276092.2-201ENST00000417668 665 ntBASIC20.15■□□□□ 0.82
XRCC1P18887 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 AC092118.2-201ENST00000613495 667 ntBASIC20.15■□□□□ 0.82
XRCC1P18887 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
XRCC1P18887 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.15■□□□□ 0.82
XRCC1P18887 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
XRCC1P18887 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC1P18887 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
XRCC1P18887 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
XRCC1P18887 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC1P18887 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC1P18887 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC1P18887 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
XRCC1P18887 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC1P18887 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.14■□□□□ 0.81
XRCC1P18887 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC1P18887 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.14■□□□□ 0.81
XRCC1P18887 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC1P18887 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
XRCC1P18887 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.14■□□□□ 0.81
XRCC1P18887 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC1P18887 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC1P18887 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.14■□□□□ 0.81
XRCC1P18887 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.14■□□□□ 0.81
XRCC1P18887 AC007322.3-201ENST00000426526 701 ntBASIC20.14■□□□□ 0.81
XRCC1P18887 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.14■□□□□ 0.81
XRCC1P18887 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.14■□□□□ 0.81
XRCC1P18887 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
XRCC1P18887 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.14■□□□□ 0.81
XRCC1P18887 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
XRCC1P18887 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
XRCC1P18887 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC1P18887 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC1P18887 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC1P18887 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
XRCC1P18887 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC1P18887 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC1P18887 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.13■□□□□ 0.81
XRCC1P18887 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.13■□□□□ 0.81
XRCC1P18887 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.13■□□□□ 0.81
XRCC1P18887 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.13■□□□□ 0.81
XRCC1P18887 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC1P18887 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC1P18887 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC1P18887 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms