Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
TNFP01375 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.85■□□□□ 0.77
TNFP01375 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.85■□□□□ 0.77
TNFP01375 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.85■□□□□ 0.77
TNFP01375 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.85■□□□□ 0.77
TNFP01375 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.85■□□□□ 0.77
TNFP01375 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TNFP01375 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
TNFP01375 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
TNFP01375 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TNFP01375 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.85■□□□□ 0.77
TNFP01375 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TNFP01375 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
TNFP01375 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.84■□□□□ 0.77
TNFP01375 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.84■□□□□ 0.77
TNFP01375 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.84■□□□□ 0.77
TNFP01375 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
TNFP01375 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFP01375 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFP01375 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
TNFP01375 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFP01375 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.83■□□□□ 0.77
TNFP01375 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFP01375 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
TNFP01375 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFP01375 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.83■□□□□ 0.77
TNFP01375 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFP01375 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TNFP01375 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.83■□□□□ 0.77
TNFP01375 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.83■□□□□ 0.77
TNFP01375 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TNFP01375 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFP01375 RPS2P4-201ENST00000476944 856 ntBASIC19.83■□□□□ 0.77
TNFP01375 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFP01375 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TNFP01375 AC023632.3-201ENST00000521633 145 ntBASIC19.83■□□□□ 0.77
TNFP01375 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.83■□□□□ 0.77
TNFP01375 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.83■□□□□ 0.77
TNFP01375 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.83■□□□□ 0.77
TNFP01375 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFP01375 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.83■□□□□ 0.77
TNFP01375 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TNFP01375 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TNFP01375 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TNFP01375 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.83■□□□□ 0.76
TNFP01375 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.83■□□□□ 0.76
TNFP01375 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.83■□□□□ 0.76
TNFP01375 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TNFP01375 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.82■□□□□ 0.76
TNFP01375 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFP01375 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.82■□□□□ 0.76
TNFP01375 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.82■□□□□ 0.76
TNFP01375 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.82■□□□□ 0.76
TNFP01375 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFP01375 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFP01375 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
TNFP01375 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFP01375 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFP01375 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TNFP01375 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.81■□□□□ 0.76
TNFP01375 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms