Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AK4P3-201ENST00000418260 669 ntBASIC20.55■□□□□ 0.88
PDGFBP01127 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.55■□□□□ 0.88
PDGFBP01127 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.55■□□□□ 0.88
PDGFBP01127 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.55■□□□□ 0.88
PDGFBP01127 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFBP01127 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFBP01127 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFBP01127 AC027702.1-201ENST00000563810 1770 ntBASIC20.54■□□□□ 0.88
PDGFBP01127 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PDGFBP01127 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFBP01127 AC026396.1-201ENST00000419388 421 ntBASIC20.54■□□□□ 0.88
PDGFBP01127 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PDGFBP01127 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
PDGFBP01127 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.54■□□□□ 0.88
PDGFBP01127 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.54■□□□□ 0.88
PDGFBP01127 AC004264.1-201ENST00000608354 794 ntBASIC20.54■□□□□ 0.88
PDGFBP01127 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFBP01127 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFBP01127 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFBP01127 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PDGFBP01127 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.53■□□□□ 0.88
PDGFBP01127 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PDGFBP01127 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 KRT18P48-201ENST00000434763 852 ntBASIC20.53■□□□□ 0.88
PDGFBP01127 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.53■□□□□ 0.88
PDGFBP01127 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.53■□□□□ 0.88
PDGFBP01127 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFBP01127 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
PDGFBP01127 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.52■□□□□ 0.88
PDGFBP01127 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.52■□□□□ 0.88
PDGFBP01127 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.52■□□□□ 0.88
PDGFBP01127 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.52■□□□□ 0.88
PDGFBP01127 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.52■□□□□ 0.88
PDGFBP01127 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.52■□□□□ 0.88
PDGFBP01127 AC063952.2-201ENST00000498792 1227 ntBASIC20.52■□□□□ 0.88
PDGFBP01127 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.52■□□□□ 0.88
PDGFBP01127 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFBP01127 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
PDGFBP01127 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.52■□□□□ 0.88
PDGFBP01127 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
PDGFBP01127 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFBP01127 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFBP01127 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFBP01127 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFBP01127 DUSP5P1-201ENST00000441325 1139 ntBASIC20.51■□□□□ 0.87
PDGFBP01127 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFBP01127 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.51■□□□□ 0.87
PDGFBP01127 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.51■□□□□ 0.87
PDGFBP01127 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFBP01127 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFBP01127 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
PDGFBP01127 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFBP01127 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.5■□□□□ 0.87
PDGFBP01127 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.5■□□□□ 0.87
PDGFBP01127 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFBP01127 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.5■□□□□ 0.87
PDGFBP01127 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 KRT16P1-201ENST00000399124 1418 ntBASIC20.5■□□□□ 0.87
PDGFBP01127 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.5■□□□□ 0.87
PDGFBP01127 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFBP01127 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PDGFBP01127 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.5■□□□□ 0.87
PDGFBP01127 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFBP01127 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFBP01127 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFBP01127 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFBP01127 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFBP01127 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms