Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.26■□□□□ 0.67
CPSF4O95639 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CPSF4O95639 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CPSF4O95639 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CPSF4O95639 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.26■□□□□ 0.67
CPSF4O95639 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4O95639 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.26■□□□□ 0.67
CPSF4O95639 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.25■□□□□ 0.67
CPSF4O95639 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CPSF4O95639 AC091799.1-201ENST00000422823 811 ntBASIC19.25■□□□□ 0.67
CPSF4O95639 ZNRF2P3-201ENST00000424200 374 ntBASIC19.25■□□□□ 0.67
CPSF4O95639 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.25■□□□□ 0.67
CPSF4O95639 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.25■□□□□ 0.67
CPSF4O95639 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.25■□□□□ 0.67
CPSF4O95639 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.25■□□□□ 0.67
CPSF4O95639 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CPSF4O95639 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CPSF4O95639 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4O95639 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.25■□□□□ 0.67
CPSF4O95639 RBM17P2-201ENST00000616397 1405 ntBASIC19.25■□□□□ 0.67
CPSF4O95639 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.25■□□□□ 0.67
CPSF4O95639 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.24■□□□□ 0.67
CPSF4O95639 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CPSF4O95639 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 AC007322.3-201ENST00000426526 701 ntBASIC19.24■□□□□ 0.67
CPSF4O95639 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.24■□□□□ 0.67
CPSF4O95639 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CPSF4O95639 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4O95639 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.24■□□□□ 0.67
CPSF4O95639 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CPSF4O95639 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4O95639 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CPSF4O95639 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CPSF4O95639 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.23■□□□□ 0.67
CPSF4O95639 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CPSF4O95639 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CPSF4O95639 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CPSF4O95639 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.23■□□□□ 0.67
CPSF4O95639 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.23■□□□□ 0.67
CPSF4O95639 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.23■□□□□ 0.67
CPSF4O95639 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.23■□□□□ 0.67
CPSF4O95639 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CPSF4O95639 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CPSF4O95639 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4O95639 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
CPSF4O95639 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
CPSF4O95639 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CPSF4O95639 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CPSF4O95639 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.22■□□□□ 0.67
CPSF4O95639 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 AC243732.1-201ENST00000612648 864 ntBASIC19.22■□□□□ 0.67
CPSF4O95639 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.22■□□□□ 0.67
CPSF4O95639 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CPSF4O95639 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CPSF4O95639 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4O95639 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.21■□□□□ 0.67
CPSF4O95639 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms