Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC25.67■■□□□ 1.7
CACNA1FO60840 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1FO60840 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC25.67■■□□□ 1.7
CACNA1FO60840 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
CACNA1FO60840 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1FO60840 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1FO60840 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC25.67■■□□□ 1.7
CACNA1FO60840 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC25.67■■□□□ 1.7
CACNA1FO60840 AL121906.2-201ENST00000621597 723 ntBASIC25.67■■□□□ 1.7
CACNA1FO60840 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1FO60840 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1FO60840 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CACNA1FO60840 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC25.66■■□□□ 1.7
CACNA1FO60840 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC25.66■■□□□ 1.7
CACNA1FO60840 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC25.66■■□□□ 1.7
CACNA1FO60840 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC25.66■■□□□ 1.7
CACNA1FO60840 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 SOX15-203ENST00000570788 1093 ntBASIC25.66■■□□□ 1.7
CACNA1FO60840 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.66■■□□□ 1.7
CACNA1FO60840 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CACNA1FO60840 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1FO60840 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.65■■□□□ 1.7
CACNA1FO60840 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CACNA1FO60840 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC25.65■■□□□ 1.7
CACNA1FO60840 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
CACNA1FO60840 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1FO60840 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CACNA1FO60840 AL137060.1-201ENST00000618151 2648 ntBASIC25.65■■□□□ 1.7
CACNA1FO60840 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.65■■□□□ 1.7
CACNA1FO60840 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CACNA1FO60840 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC25.64■■□□□ 1.7
CACNA1FO60840 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CACNA1FO60840 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CACNA1FO60840 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CACNA1FO60840 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CACNA1FO60840 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CACNA1FO60840 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC25.64■■□□□ 1.7
CACNA1FO60840 AC098590.1-201ENST00000468126 897 ntBASIC25.64■■□□□ 1.7
CACNA1FO60840 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC25.64■■□□□ 1.7
CACNA1FO60840 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC25.64■■□□□ 1.7
CACNA1FO60840 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC25.64■■□□□ 1.7
CACNA1FO60840 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.69
CACNA1FO60840 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CACNA1FO60840 GABARAPL3-202ENST00000624044 1851 ntBASIC25.64■■□□□ 1.69
CACNA1FO60840 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CACNA1FO60840 TSPY20P-201ENST00000450910 630 ntBASIC25.64■■□□□ 1.69
CACNA1FO60840 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 KRT17P3-201ENST00000420566 1262 ntBASIC25.63■■□□□ 1.69
CACNA1FO60840 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC25.63■■□□□ 1.69
CACNA1FO60840 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC25.63■■□□□ 1.69
CACNA1FO60840 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC25.63■■□□□ 1.69
CACNA1FO60840 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC25.63■■□□□ 1.69
CACNA1FO60840 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CACNA1FO60840 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CACNA1FO60840 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.62■■□□□ 1.69
CACNA1FO60840 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CACNA1FO60840 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CACNA1FO60840 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC25.62■■□□□ 1.69
CACNA1FO60840 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CACNA1FO60840 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CACNA1FO60840 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
CACNA1FO60840 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
CACNA1FO60840 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
CACNA1FO60840 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC25.62■■□□□ 1.69
CACNA1FO60840 IRX5-204ENST00000560154 879 ntTSL 5 BASIC25.62■■□□□ 1.69
CACNA1FO60840 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CACNA1FO60840 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC25.61■■□□□ 1.69
CACNA1FO60840 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CACNA1FO60840 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
CACNA1FO60840 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CACNA1FO60840 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC25.61■■□□□ 1.69
CACNA1FO60840 MFF-205ENST00000354503 1085 ntTSL 2 BASIC25.61■■□□□ 1.69
CACNA1FO60840 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
CACNA1FO60840 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC25.61■■□□□ 1.69
CACNA1FO60840 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms