Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.88■□□□□ 0.61
PRKNO60260 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.88■□□□□ 0.61
PRKNO60260 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PRKNO60260 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.88■□□□□ 0.61
PRKNO60260 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKNO60260 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PRKNO60260 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PRKNO60260 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PRKNO60260 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PRKNO60260 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.87■□□□□ 0.61
PRKNO60260 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PRKNO60260 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PRKNO60260 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.87■□□□□ 0.61
PRKNO60260 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.87■□□□□ 0.61
PRKNO60260 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PRKNO60260 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.87■□□□□ 0.61
PRKNO60260 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.87■□□□□ 0.61
PRKNO60260 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.87■□□□□ 0.61
PRKNO60260 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PRKNO60260 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.86■□□□□ 0.61
PRKNO60260 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.86■□□□□ 0.61
PRKNO60260 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.86■□□□□ 0.61
PRKNO60260 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.86■□□□□ 0.61
PRKNO60260 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.86■□□□□ 0.61
PRKNO60260 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
PRKNO60260 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKNO60260 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.85■□□□□ 0.61
PRKNO60260 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
PRKNO60260 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.85■□□□□ 0.61
PRKNO60260 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.85■□□□□ 0.61
PRKNO60260 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.85■□□□□ 0.61
PRKNO60260 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.85■□□□□ 0.61
PRKNO60260 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PRKNO60260 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKNO60260 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 KRT8P36-201ENST00000489121 1440 ntBASIC18.84■□□□□ 0.61
PRKNO60260 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.84■□□□□ 0.61
PRKNO60260 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.84■□□□□ 0.61
PRKNO60260 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.84■□□□□ 0.61
PRKNO60260 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
PRKNO60260 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.84■□□□□ 0.61
PRKNO60260 PGM5P4-201ENST00000421970 445 ntBASIC18.84■□□□□ 0.61
PRKNO60260 TSPY20P-201ENST00000450910 630 ntBASIC18.84■□□□□ 0.61
PRKNO60260 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.84■□□□□ 0.61
PRKNO60260 C2orf69P4-201ENST00000565394 541 ntBASIC18.84■□□□□ 0.61
PRKNO60260 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
PRKNO60260 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
PRKNO60260 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 AC073314.1-201ENST00000568729 2216 ntBASIC18.84■□□□□ 0.61
PRKNO60260 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PRKNO60260 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PRKNO60260 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PRKNO60260 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PRKNO60260 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PRKNO60260 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PRKNO60260 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PRKNO60260 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PRKNO60260 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PRKNO60260 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.83■□□□□ 0.6
PRKNO60260 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.83■□□□□ 0.6
PRKNO60260 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms