Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC093787.1-201ENST00000450396 207 ntBASIC19.23■□□□□ 0.67
PROM1O43490 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
PROM1O43490 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PROM1O43490 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.23■□□□□ 0.67
PROM1O43490 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 AC092720.2-201ENST00000602388 1665 ntBASIC19.23■□□□□ 0.67
PROM1O43490 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.23■□□□□ 0.67
PROM1O43490 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.23■□□□□ 0.67
PROM1O43490 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 HLA-L-209ENST00000420110 1011 ntBASIC19.22■□□□□ 0.67
PROM1O43490 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.22■□□□□ 0.67
PROM1O43490 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.22■□□□□ 0.67
PROM1O43490 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.22■□□□□ 0.67
PROM1O43490 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
PROM1O43490 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PROM1O43490 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.22■□□□□ 0.67
PROM1O43490 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PROM1O43490 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 LINC01521-201ENST00000504184 1943 ntBASIC19.21■□□□□ 0.67
PROM1O43490 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.21■□□□□ 0.67
PROM1O43490 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.21■□□□□ 0.67
PROM1O43490 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.21■□□□□ 0.67
PROM1O43490 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.21■□□□□ 0.67
PROM1O43490 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 KRT18P68-201ENST00000392293 1000 ntBASIC19.21■□□□□ 0.67
PROM1O43490 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 CYP2T3P-201ENST00000601990 817 ntBASIC19.21■□□□□ 0.67
PROM1O43490 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.21■□□□□ 0.67
PROM1O43490 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PROM1O43490 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PROM1O43490 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
PROM1O43490 RNF165-205ENST00000588679 2904 ntBASIC19.21■□□□□ 0.67
PROM1O43490 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.21■□□□□ 0.66
PROM1O43490 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PROM1O43490 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PROM1O43490 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 AF201337.1-201ENST00000520239 748 ntBASIC19.2■□□□□ 0.66
PROM1O43490 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PROM1O43490 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PROM1O43490 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.19■□□□□ 0.66
PROM1O43490 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.19■□□□□ 0.66
PROM1O43490 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
PROM1O43490 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PROM1O43490 AL355472.2-201ENST00000422958 438 ntBASIC19.19■□□□□ 0.66
PROM1O43490 AC006970.2-201ENST00000450065 779 ntBASIC19.19■□□□□ 0.66
PROM1O43490 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.19■□□□□ 0.66
PROM1O43490 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.19■□□□□ 0.66
PROM1O43490 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.19■□□□□ 0.66
PROM1O43490 AC105036.2-201ENST00000569468 176 ntBASIC19.19■□□□□ 0.66
PROM1O43490 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms