Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC01549A6NIU2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 AC020763.4-201ENST00000623414 4170 ntBASIC14.38□□□□□ -0.11
LINC01549A6NIU2 AC005332.7-201ENST00000614046 2005 ntBASIC14.38□□□□□ -0.11
LINC01549A6NIU2 BX005040.4-201ENST00000637145 1518 ntBASIC14.38□□□□□ -0.11
LINC01549A6NIU2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC01549A6NIU2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC01549A6NIU2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AC009237.3-201ENST00000393279 1427 ntBASIC14.36□□□□□ -0.11
LINC01549A6NIU2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AC079598.2-202ENST00000546624 1451 ntBASIC14.36□□□□□ -0.11
LINC01549A6NIU2 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC01549A6NIU2 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms