Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CD177P1-201ENST00000606252 935 ntBASIC18.45■□□□□ 0.54
SHANK1Q9Y566 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK1Q9Y566 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK1Q9Y566 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 KRT8P9-201ENST00000558927 1449 ntBASIC18.43■□□□□ 0.54
SHANK1Q9Y566 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 NUDT16P1-203ENST00000513809 620 ntBASIC18.43■□□□□ 0.54
SHANK1Q9Y566 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 PRKY-204ENST00000533551 1019 ntBASIC18.43■□□□□ 0.54
SHANK1Q9Y566 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK1Q9Y566 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 AC005829.2-201ENST00000571422 1056 ntBASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 FBXW4P1-201ENST00000426721 2239 ntBASIC18.42■□□□□ 0.54
SHANK1Q9Y566 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 AC092053.2-201ENST00000640557 1818 ntBASIC18.42■□□□□ 0.54
SHANK1Q9Y566 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SHANK1Q9Y566 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AC116050.2-201ENST00000612102 1779 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms