Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 CYP21A1P-202ENST00000354927 1481 ntBASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 CNN2P6-201ENST00000439038 900 ntBASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 RARRES2P4-201ENST00000514074 484 ntBASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 AC069236.1-201ENST00000604339 616 ntBASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 AL356652.1-201ENST00000615962 565 ntBASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 AL162377.1-201ENST00000618844 1793 ntBASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS9D1Q9Y2B5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 AC016405.3-201ENST00000607710 860 ntBASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 AC008694.1-202ENST00000636953 945 ntBASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 AC068338.2-201ENST00000563278 1430 ntBASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS9D1Q9Y2B5 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 MCRIP2P1-201ENST00000394346 511 ntBASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 AC007322.1-201ENST00000426983 750 ntBASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 AC022517.1-201ENST00000592429 346 ntBASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS9D1Q9Y2B5 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
VPS9D1Q9Y2B5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms