Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 SLC7A5P2-201ENST00000553010 536 ntBASIC16.41■□□□□ 0.22
FOXA2Q9Y261 AL137784.2-201ENST00000607332 1000 ntBASIC16.41■□□□□ 0.22
FOXA2Q9Y261 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA2Q9Y261 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 AC006015.1-201ENST00000429970 570 ntBASIC16.4■□□□□ 0.22
FOXA2Q9Y261 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 AC116050.2-201ENST00000612102 1779 ntBASIC16.4■□□□□ 0.22
FOXA2Q9Y261 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA2Q9Y261 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
FOXA2Q9Y261 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 MIR2861-201ENST00000636310 90 ntBASIC16.39■□□□□ 0.21
FOXA2Q9Y261 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA2Q9Y261 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.38■□□□□ 0.21
FOXA2Q9Y261 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 BID-214ENST00000617586 542 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA2Q9Y261 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms