Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 KRASP1-201ENST00000407852 552 ntBASIC38.85■■■■□ 3.81
SHROOM4Q9ULL8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC38.85■■■■□ 3.81
SHROOM4Q9ULL8 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC38.85■■■■□ 3.81
SHROOM4Q9ULL8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC38.84■■■■□ 3.81
SHROOM4Q9ULL8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC38.84■■■■□ 3.81
SHROOM4Q9ULL8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC38.84■■■■□ 3.81
SHROOM4Q9ULL8 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC38.84■■■■□ 3.81
SHROOM4Q9ULL8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC38.84■■■■□ 3.81
SHROOM4Q9ULL8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 AC116050.2-201ENST00000612102 1779 ntBASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 ARMC10P1-201ENST00000313754 855 ntBASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC38.83■■■■□ 3.81
SHROOM4Q9ULL8 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
SHROOM4Q9ULL8 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC38.82■■■■□ 3.81
SHROOM4Q9ULL8 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.8
SHROOM4Q9ULL8 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC38.82■■■■□ 3.8
SHROOM4Q9ULL8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC38.82■■■■□ 3.8
SHROOM4Q9ULL8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.8
SHROOM4Q9ULL8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 AC113347.1-201ENST00000413321 391 ntBASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC38.81■■■■□ 3.8
SHROOM4Q9ULL8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC38.8■■■■□ 3.8
SHROOM4Q9ULL8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC38.79■■■■□ 3.8
SHROOM4Q9ULL8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC38.78■■■■□ 3.8
SHROOM4Q9ULL8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC38.77■■■■□ 3.8
SHROOM4Q9ULL8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC38.77■■■■□ 3.8
SHROOM4Q9ULL8 MIR6786-201ENST00000616843 113 ntBASIC38.77■■■■□ 3.8
SHROOM4Q9ULL8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC38.77■■■■□ 3.8
SHROOM4Q9ULL8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
SHROOM4Q9ULL8 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC38.77■■■■□ 3.8
SHROOM4Q9ULL8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 AP003071.4-201ENST00000562276 1284 ntBASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC38.76■■■■□ 3.8
SHROOM4Q9ULL8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.79
SHROOM4Q9ULL8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC38.76■■■■□ 3.79
SHROOM4Q9ULL8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC38.75■■■■□ 3.79
SHROOM4Q9ULL8 MMP23A-201ENST00000234610 1017 ntBASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC38.74■■■■□ 3.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms